RNA–Protein interactions for RNA: ENST00000252444.9

LDLR-201, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best)

Gene LDLR, Length 5,337 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-201ENST00000252444 MAPK14Q16539 360 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 RPTNQ6XPR3 784 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 KLHDC8BQ8IXV7 354 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 IL22RA1Q8N6P7 574 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 ANKFN1Q8N957 763 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 OR2L3Q8NG85 312 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 OR52P1PQ8NH57 321 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 JPH3Q8WXH2 748 aaPredicted RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 OR8D2Q9GZM6 311 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 TMEM14AQ9Y6G1 99 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 SCAMP1O15126 338 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 RGS5O15539 181 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 B4GALT3O60512 393 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 CPNE3O75131 537 aaKnown RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 IMPA1P29218 277 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 CDKN1CP49918 316 aaPredicted RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 RASGEF1BQ0VAM2 473 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 GRB7Q14451 532 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 NDUFAF6Q330K2 333 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 LRIT3Q3SXY7 679 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 CMPK2Q5EBM0 449 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 TMEM214Q6NUQ4 689 aaKnown RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 TTLL10Q6ZVT0 673 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 PEG10Q86TG7 708 aaKnown RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 PHTF2Q8N3S3 785 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 ACOT4Q8N9L9 421 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 LMF2Q9BU23 707 aaKnown RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 TMEM30AQ9NV96 361 aa12.98□□□□□ -0.33
LDLR-201ENST00000252444 GEMIN8Q9NWZ8 242 aaKnown RBP12.98□□□□□ -0.33
LDLR-201ENST00000252444 OR5K3A6NET4 321 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 OR6C76A6NM76 312 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 IGHA2P01877 340 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 CCR2P41597 374 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 MYBPC1Q00872 1141 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 ARHGAP11AQ6P4F7 1023 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 TMEM151BQ8IW70 566 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 SORT1Q99523 831 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 PCDHA9Q9Y5H5 950 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 VILLO15195 856 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 ZNF432O94892 652 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 CSTAP01040 98 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 NDUFV2P19404 249 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 GABRA3P34903 492 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 TUBA3CQ13748 450 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 NEDD8Q15843 81 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 AGBL4Q5VU57 503 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 RBP7Q96R05 134 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 MTG2Q9H4K7 406 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 GORASP2Q9H8Y8 452 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 PCDHGB5Q9Y5G0 923 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 ZNF888P0CJ79 500 aaPredicted RBP12.97□□□□□ -0.33
LDLR-201ENST00000252444 PRPH2P23942 346 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 NUP62P37198 522 aaPredicted RBP12.97□□□□□ -0.33
LDLR-201ENST00000252444 EIF3IQ13347 325 aaKnown RBP12.97□□□□□ -0.33
LDLR-201ENST00000252444 MPP2Q14168 576 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 EXT1Q16394 746 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 DEFB133Q30KQ1 61 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 LRRC69Q6ZNQ3 347 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 OIT3Q8WWZ8 545 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 ZNF570Q96NI8 536 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 CIB1Q99828 191 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 MND1Q9BWT6 205 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 MS4A8Q9BY19 250 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 ARMC1Q9NVT9 282 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 MCM3APO60318 1980 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 SERTM1A2A2V5 107 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 hCG_2039718K7EN88 272 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 DIO3P55073 304 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 CLDN2P57739 230 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 ZNF789Q5FWF6 425 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 KIAA1614Q5VZ46 1190 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 SBSNQ6UWP8 590 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 LAPTM4BQ86VI4 370 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 ASB15Q8WXK1 588 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 MRGPRX1Q96LB2 322 aa12.97□□□□□ -0.33
LDLR-201ENST00000252444 PRRT4C9JH25 899 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 MAPK11Q15759 364 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 SGCBQ16585 318 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 ZIK1Q3SY52 487 aaPredicted RBP12.96□□□□□ -0.33
LDLR-201ENST00000252444 ANKDD1AQ495B1 522 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 FGD2Q7Z6J4 655 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 ATCAYQ86WG3 371 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 ETFBKMTQ8IXQ9 262 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 SLC15A3Q8IY34 581 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 NODALQ96S42 347 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 SLC39A1Q9NY26 324 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 GPR45Q9Y5Y3 372 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 CYB5AP00167 134 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 SDC2P34741 201 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 SHC2P98077 582 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 RIPPLY1Q0D2K3 151 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 SWT1Q5T5J6 900 aaKnown RBP12.96□□□□□ -0.33
LDLR-201ENST00000252444 FRS2Q8WU20 508 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 KCNK13Q9HB14 408 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 KLHL1Q9NR64 748 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 TAS2R7Q9NYW3 318 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 AK5Q9Y6K8 562 aa12.96□□□□□ -0.33
LDLR-201ENST00000252444 IGLV3-16A0A075B6K0 115 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 SAGE2PA6NJ88 616 aa12.96□□□□□ -0.34
LDLR-201ENST00000252444 GPX3P22352 226 aa12.96□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 87.6 ms