RNA–Protein interactions for RNA: ENST00000003302.8

USP28-201, Transcript of ubiquitin specific peptidase 28, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP28, Length 4,669 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-201ENST00000003302 IL7P13232 177 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 TBXA2RP21731 343 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 CXCR2P25025 360 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 OR2B6P58173 313 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 DMPKQ09013 629 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 HYAL2Q12891 473 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 GPR50Q13585 617 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 ATAT1Q5SQI0 421 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SNAP47Q5SQN1 464 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 METTL2BQ6P1Q9 378 aaKnown RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 PODNL1Q6PEZ8 512 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 LHFPL3Q86UP9 236 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SLC30A8Q8IWU4 369 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 CPXM2Q8N436 756 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 DNAJB8Q8NHS0 232 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 GOT1L1Q8NHS2 421 aaPredicted RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 MYDGFQ969H8 173 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 ARRDC3Q96B67 414 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 POLR2J2Q9GZM3 115 aaKnown RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 PPIL3Q9H2H8 161 aaKnown RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 SMURF1Q9HCE7 757 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 CPNE5Q9HCH3 593 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SPG21Q9NZD8 308 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 PLEKHB1Q9UF11 243 aaPredicted RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 SEC16AO15027 2179 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 DYRK3O43781 588 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 ATG13O75143 517 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 FGF18O76093 207 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 CXCL10P02778 98 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 CATP04040 527 aaKnown RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 ZNF24P17028 368 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 DSTNP60981 165 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 HNRNPA0Q13151 305 aaKnown RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 SPHARQ15513 63 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 CRB2Q5IJ48 1285 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 FAM27D1Q5T7N8 215 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 ENKD1Q9H0I2 346 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 C11orf54Q9H0W9 315 aaPredicted RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 SPHK2Q9NRA0 654 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 ASF1AQ9Y294 204 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 FAM183AA6NL82 134 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 TLR4O00206 839 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 PITPNM1O00562 1244 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 PLA2G10O15496 165 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 NDUFB5O43674 189 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 POP7O75817 140 aaKnown RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 HMGA2P52926 109 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 RAB15P59190 212 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 RBBP4Q09028 425 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 FZD5Q13467 585 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 AGAP6Q5VW22 663 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 LILRA6Q6PI73 481 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 TAGAPQ8N103 731 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SCAIQ8N9R8 606 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 TM4SF18Q96CE8 201 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 AGAP4Q96P64 663 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SLC30A2Q9BRI3 323 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 TRMT61BQ9BVS5 477 aaKnown RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 TSSK6Q9BXA6 273 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 CDCA4Q9BXL8 241 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SP140LQ9H930 580 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 BRF2Q9HAW0 419 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 MIEF1Q9NQG6 463 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 IQCJ-SCHIP1C9J366 451 aaPredicted RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 C21orf58P58505 322 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 STXBP1P61764 594 aaKnown RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 PRKCDQ05655 676 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SP140Q13342 867 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SPIN4Q56A73 249 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 MLIPQ5VWP3 458 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 PLPP4Q5VZY2 271 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 RAET1GQ6H3X3 334 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 C6orf120Q7Z4R8 191 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SLC9B2Q86UD5 537 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 C12orf76Q8N812 135 aaPredicted RBP10.12□□□□□ -0.79
USP28-201ENST00000003302 DENND6BQ8NEG7 585 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SLC5A11Q8WWX8 675 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 LRR1Q96L50 414 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 SGPP1Q9BX95 441 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 B3GAT2Q9NPZ5 323 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 THSD1Q9NS62 852 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 KCND3Q9UK17 655 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 OR1A2Q9Y585 309 aa10.12□□□□□ -0.79
USP28-201ENST00000003302 C2orf92A0A1B0GVN3 265 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 GRM6O15303 877 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 EPHX1P07099 455 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 CHRM4P08173 479 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 CSF3P09919 207 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 ANXA8P13928 327 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 PCYT1AP49585 367 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 RAB8AP61006 207 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 CD83Q01151 205 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 SRSF5Q13243 272 aaKnown RBP10.11□□□□□ -0.79
USP28-201ENST00000003302 ZNF181Q2M3W8 571 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 SYT14P1Q58G82 188 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 NXPE4Q6UWF7 544 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 FAM129CQ86XR2 697 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 KREMEN2Q8NCW0 462 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 OR4F15Q8NGB8 312 aa10.11□□□□□ -0.79
USP28-201ENST00000003302 C17orf62Q9BQA9 187 aa10.11□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms