RNA–Protein interactions for RNA: ENST00000641996.1

SCN1A-221, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

Gene SCN1A, Length 12,903 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-221ENST00000641996 MOB1BQ7L9L4 216 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GLRX5Q86SX6 157 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 LRRC56Q8IYG6 542 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR1A1Q9P1Q5 309 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 DOCK5Q9H7D0 1870 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR2B3O76000 313 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 MT-ND4P03905 459 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GABRR2P28476 465 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TIMM50Q3ZCQ8 353 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CPTPQ5TA50 214 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PARGQ86W56 976 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PDPRQ8NCN5 879 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 AGBL5Q8NDL9 886 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR7D4Q8NG98 312 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 DUS3LQ96G46 650 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 HAPLN3Q96S86 360 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PECRQ9BY49 303 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 COMMD4Q9H0A8 199 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 IGSF9Q9P2J2 1179 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 U3KQV3 271 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 EFCAB10A6NFE3 127 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ANKDD1BA6NHY2 528 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 FAM166BA8MTA8 275 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CLDN25C9JDP6 229 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TBX10O75333 385 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 HSBP1O75506 76 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 FARS2O95363 451 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ACVR1BP36896 505 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GPR3P46089 330 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 FKBP3Q00688 224 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PRSS53Q2L4Q9 553 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NAPEPLDQ6IQ20 393 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 BTLAQ7Z6A9 289 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NOXA1Q86UR1 476 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GLB1L2Q8IW92 636 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ADGRF2Q8IZF7 708 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TXNDC5Q8NBS9 432 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR5M8Q8NGP6 311 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM143Q96AN5 459 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 LRR1Q96L50 414 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PTCHD1Q96NR3 888 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ARHGDIGQ99819 225 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TM6SF2Q9BZW4 377 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 EMC7Q9NPA0 242 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TEX10Q9NXF1 929 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 EGFL7Q9UHF1 273 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 IGSF1Q8N6C5 1336 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 F6UZH7 168 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PDYNP01213 254 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 MT-ND2P03891 347 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 DUOXA1Q1HG43 343 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 C11orf63Q6NUN7 778 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 C16orf89Q6UX73 402 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 REC114Q7Z4M0 266 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR10Q1Q8NGQ4 319 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 MBD3L1Q8WWY6 194 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GTF3AQ92664 365 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ALG3Q92685 438 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 L2HGDHQ9H9P8 463 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ERICH3Q5RHP9 1530 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ELOA3CA0A087WX78 387 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ELOA3DA6NLF2 546 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ALOX12BO75342 701 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SCELO95171 688 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CTSAP10619 480 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GPX6P59796 221 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 SERTAD2Q14140 314 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ACKR1Q16570 336 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 FAM187BQ17R55 369 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 LEXMQ3ZCV2 418 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 LINC01559Q495D7 138 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OVCH2Q7RTZ1 564 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ACOT12Q8WYK0 555 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ZSWIM3Q96MP5 696 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 DIRC2Q96SL1 478 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ZNF382Q96SR6 550 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 MED18Q9BUE0 208 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 RNF208Q9H0X6 261 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ARV1Q9H2C2 271 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 NDRG3Q9UGV2 375 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CD84Q9UIB8 345 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PBRM1Q86U86 1689 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TTC28Q96AY4 2481 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 BAZ1AQ9NRL2 1556 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 PDCD5O14737 125 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 GRID2O43424 1007 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 HCN1O60741 890 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CBX7O95931 251 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ERBB2P04626 1255 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ADH5P11766 374 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ADRB3P13945 408 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ADCYAP1R1P41586 468 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 ZP2Q05996 745 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 CRYZQ08257 329 aaKnown RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM115Q12893 351 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 LSRQ86X29 649 aaPredicted RBP3.42□□□□□ -1.86
SCN1A-221ENST00000641996 YAF2Q8IY57 180 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 TMEM192Q8IY95 271 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 FBXO36Q8NEA4 188 aa3.42□□□□□ -1.86
SCN1A-221ENST00000641996 OR6T1Q8NGN1 323 aa3.42□□□□□ -1.86
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms