RNA–Protein interactions for RNA: ENST00000640036.1

SCN1A-218, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN1A, Length 8,131 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-218ENST00000640036 NOTCH2Q04721 2471 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RNF13O43567 381 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PET100P0DJ07 73 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 IDO1P14902 403 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 MYL9P24844 172 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RBM34P42696 430 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 HK2P52789 917 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ARPC4P59998 168 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 DBPQ10586 325 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NFE2L1Q14494 772 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 FGFBP1Q14512 234 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 QPCTQ16769 361 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 MSS51Q4VC12 460 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TIGD2Q4W5G0 525 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ALG10Q5BKT4 473 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ARHGAP12Q8IWW6 846 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 LRRC17Q8N6Y2 441 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NDNFQ8TB73 568 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM171Q8WVE6 324 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 MOAP1Q96BY2 351 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 CLPTM1LQ96KA5 538 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 LMF2Q9BU23 707 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ERGIC3Q9Y282 383 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PCDHGB7Q9Y5F8 929 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 LAMB4A4D0S4 1761 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 GABRA3P34903 492 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ARF3P61204 181 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ARF1P84077 181 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NPTX1Q15818 432 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ZMAT1Q5H9K5 638 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 C3P1Q6ZMU1 363 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 FRRS1Q6ZNA5 592 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PWWP2AQ96N64 755 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 THAP1Q9NVV9 213 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 WDR45Q9Y484 360 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 OTOGLQ3ZCN5 2332 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 HAT1O14929 419 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 CHST10O43529 356 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 HYAL3O43820 417 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ABLIM3O94929 683 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 CD9P21926 228 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 THBS2P35442 1172 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SLC18A2Q05940 514 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 PCDH1Q08174 1060 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RHEBQ15382 184 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ALG10BQ5I7T1 473 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 OR2A2Q6IF42 318 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TTC27Q6P3X3 843 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 ERICH5Q6P6B1 374 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SLC22A25Q6T423 547 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM17Q86X19 198 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 OR13C4Q8NGS5 318 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 VANGL1Q8TAA9 524 aaPredicted RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 POC1BQ8TC44 478 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 TSEN15Q8WW01 171 aaKnown RBP4.8□□□□□ -1.64
SCN1A-218ENST00000640036 RORBQ92753 470 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 SLC6A15Q9H2J7 730 aa4.8□□□□□ -1.64
SCN1A-218ENST00000640036 NUP188Q5SRE5 1749 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TPP1O14773 563 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ANKRD28O15084 1053 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 UGT2B11O75310 529 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 NIPSNAP2O75323 286 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 MRPL33O75394 65 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SEC24DO94855 1032 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 IFNA6P05013 189 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 LCKP06239 509 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ATP6V1B1P15313 513 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FECHP22830 423 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PTGS2P35354 604 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FASTKD3Q14CZ7 662 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 SLC14A2Q15849 920 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 DPY19L1Q2PZI1 675 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FRG2Q64ET8 278 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM71Q6P5X7 295 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FAM199XQ6PEV8 388 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PAPD4Q6PIY7 484 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ARCQ7LC44 396 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 LGI4Q8N135 537 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PARP8Q8N3A8 854 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CLDN19Q8N6F1 224 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 C19orf47Q8N9M1 422 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ACTRT1Q8TDG2 376 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ZC3H10Q96K80 434 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TMEM68Q96MH6 324 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FRG2BQ96QU4 278 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 DCUN1D5Q9BTE7 237 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TDRD1Q9BXT4 1180 aaKnown RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 FN3KQ9H479 309 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 LOC105369274A0A096LPK9 316 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 C17orf105B2RV13 164 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 DSCR3O14972 297 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 EPHB6O15197 1021 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OXSR1O95747 527 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 MYF5P13349 255 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 PORP16435 677 aaPredicted RBP4.79□□□□□ -1.64
SCN1A-218ENST00000640036 OMPP47874 163 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 ZP2Q05996 745 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 CAMK2DQ13557 499 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 IL11RAQ14626 422 aa4.79□□□□□ -1.64
SCN1A-218ENST00000640036 TMPRSS9Q7Z410 1059 aa4.79□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms