RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 TRAM2Q15035 370 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF423Q2M1K9 1284 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CMC1Q7Z7K0 106 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ESX1Q8N693 406 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CNTD1Q8N815 330 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 NUP43Q8NFH3 380 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 THAP4Q8WY91 577 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 KCTD7Q96MP8 289 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 GNB4Q9HAV0 340 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 MEPEQ9NQ76 525 aaPredicted RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SNTG1Q9NSN8 517 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 KLHL42Q9P2K6 505 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF69Q9UC07 566 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 FAM96BQ9Y3D0 163 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 C1orf226A1L170 272 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 H7BY64 318 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SLC16A5O15375 505 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 RFPL2O75678 378 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SNCGO76070 127 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ZFAND5O76080 213 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SLC34A2O95436 690 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SLC16A8O95907 504 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 HLA-DQB2P05538 268 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 NDUFV2P19404 249 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 GABRA2P47869 451 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SLC3A1Q07837 685 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 AGTRAPQ6RW13 159 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 SUSD1Q6UWL2 747 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 AHSA2Q719I0 299 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PXKQ7Z7A4 578 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 OR5AK3PQ8NH89 298 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 OR5P2Q8WZ92 322 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ZFP3Q96NJ6 502 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 PRAP1Q96NZ9 151 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 ANKRA2Q9H9E1 313 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 CUTCQ9NTM9 273 aa5.88□□□□□ -1.47
SCN1A-217ENST00000637988 NXT1Q9UKK6 140 aaKnown RBP5.88□□□□□ -1.47
SCN1A-217ENST00000637988 C9IYK1 514 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CLIC3O95833 236 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CLEC3BP05452 202 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 HNF1AP20823 631 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 VAMP1P23763 118 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CDK2P24941 298 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ACTA2P62736 377 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ACTG2P63267 376 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 OR8B8Q15620 311 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 UPP1Q16831 310 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 AARDQ4LEZ3 155 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 FAM76BQ5HYJ3 339 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 OR52E8Q6IFG1 317 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 OR6N2Q8NGY6 317 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 EMID1Q96A84 441 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 MYRFLQ96LU7 910 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CIB1Q99828 191 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 DOHHQ9BU89 302 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ZBTB20Q9HC78 741 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TM7SF3Q9NS93 570 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 A0A0J9YY10 115 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 A0A1B0GTW7 788 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 MKRN2OSH3BPM6 223 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 F2P00734 622 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 SPATA31C1P0DKV0 1188 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PEPDP12955 493 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 AMY2BP19961 511 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CPT2P23786 658 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 KCNQ1P51787 676 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 RAB15P59190 212 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 EEF1A1P68104 462 aaKnown RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 FUT2Q10981 343 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ECM1Q16610 540 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ODF4Q2M2E3 257 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TRIM61Q5EBN2 209 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TMEM69Q5SWH9 247 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ZNF554Q86TJ5 538 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 SPPL2CQ8IUH8 684 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 C1orf52Q8N6N3 182 aaKnown RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CCDC71LQ8N9Z2 235 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PYCR2Q96C36 320 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CCDC120Q96HB5 630 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 TREX2Q9BQ50 279 aaPredicted RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 RPF2Q9H7B2 306 aaKnown RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 SRA1Q9HD15 236 aaKnown RBP5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PPM1HQ9ULR3 514 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 DOT1LQ8TEK3 1739 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PIK3C2AO00443 1686 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PRAMEF33A0A0G2JMD5 474 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CLIC1O00299 241 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 PRAMEF10O60809 474 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ZMPSTE24O75844 475 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ADRB3P13945 408 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 GSTT1P30711 240 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 BMI1P35226 326 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 DLSTP36957 453 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 GNB2P62879 340 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 ACSM3Q53FZ2 586 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 CRTC1Q6UUV9 634 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 UNC5DQ6UXZ4 953 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 DPY19L4Q7Z388 723 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 DCBLD1Q8N8Z6 715 aa5.87□□□□□ -1.47
SCN1A-217ENST00000637988 NETO2Q8NC67 525 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 34.2 ms