RNA–Protein interactions for RNA: ENST00000637699.1

CLN3-262, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,228 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-262ENST00000637699 RAF1P04049 648 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 SLC12A2P55011 1212 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 IRF8Q02556 426 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 TBL3Q12788 808 aaKnown RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 CHIT1Q13231 466 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 LAPTM5Q13571 262 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 FRG1Q14331 258 aaKnown RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 MORF4L2Q15014 288 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 DAZAP2Q15038 168 aaPredicted RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 ACSF3Q4G176 576 aaPredicted RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 PAGE2BQ5JRK9 111 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 Q71RC1 249 aaPredicted RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 SLC15A4Q8N697 577 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 WFDC11Q8NEX6 87 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 ZNF473Q8WTR7 871 aaKnown RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 LRRC39Q96DD0 335 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 RBM18Q96H35 190 aaKnown RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 GAL3ST4Q96RP7 486 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 SMR3AQ99954 134 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 DOHHQ9BU89 302 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 PHACTR1Q9C0D0 580 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 DERL2Q9GZP9 239 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 CAB39LQ9H9S4 337 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 QPCTLQ9NXS2 382 aa17.83■□□□□ 0.44
CLN3-262ENST00000637699 MTRF1LQ9UGC7 380 aaKnown RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 CHCHD2Q9Y6H1 151 aaPredicted RBP17.83■□□□□ 0.44
CLN3-262ENST00000637699 AHRRA9YTQ3 701 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 CCNT2O60583 730 aaKnown RBP17.82■□□□□ 0.44
CLN3-262ENST00000637699 PIAS1O75925 651 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 EPPINO95925 133 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 PCNAP12004 261 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 EPORP19235 508 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 GDF1P27539 372 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 CEACAM8P31997 349 aaPredicted RBP17.82■□□□□ 0.44
CLN3-262ENST00000637699 SSR2P43308 183 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 IGLV3-21P80748 117 aaPredicted RBP17.82■□□□□ 0.44
CLN3-262ENST00000637699 LTBQ06643 244 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 DUSP8Q13202 625 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 SLAMF1Q13291 335 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 KEAP1Q14145 624 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 DEFB113Q30KQ7 82 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 TMEM35AQ53FP2 167 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 SULT1C3Q6IMI6 304 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 MAATS1Q7Z4T9 603 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 FBXL20Q96IG2 436 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 SORBS1Q9BX66 1292 aaKnown RBP17.82■□□□□ 0.44
CLN3-262ENST00000637699 RHOJQ9H4E5 214 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 RPF2Q9H7B2 306 aaKnown RBP17.82■□□□□ 0.44
CLN3-262ENST00000637699 POPDC3Q9HBV1 291 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 CD274Q9NZQ7 290 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 ZNF629Q9UEG4 869 aaPredicted RBP17.82■□□□□ 0.44
CLN3-262ENST00000637699 SNX12Q9UMY4 172 aa17.82■□□□□ 0.44
CLN3-262ENST00000637699 IQANK1A0A1B0GTG1 560 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 TUBAL3A6NHL2 446 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 TRAPPC6AO75865 159 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 ATE1O95260 518 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 FBXO45P0C2W1 286 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 CCDC166P0CW27 439 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 SERPINB3P29508 390 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 ARL4CP56559 192 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 HERVK_113P63132 956 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 ERVK-8P63133 956 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 FASTKD3Q14CZ7 662 aaKnown RBP17.81■□□□□ 0.44
CLN3-262ENST00000637699 OR4D1Q15615 310 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 FBXL19-AS1Q494R0 122 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 POMZP3Q6PJE2 187 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 CHSY3Q70JA7 882 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 SLC29A4Q7RTT9 530 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 BBOF1Q8ND07 529 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 FBXO36Q8NEA4 188 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 C7orf57Q8NEG2 295 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 ART5Q96L15 291 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 TIMP4Q99727 224 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 ERVK-6Q9BXR3 956 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 EPB41L4BQ9H329 900 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 SDAD1Q9NVU7 687 aaKnown RBP eCLIP17.81■□□□□ 0.44
CLN3-262ENST00000637699 MOCS1Q9NZB8 636 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 FOXD3Q9UJU5 478 aaPredicted RBP17.81■□□□□ 0.44
CLN3-262ENST00000637699 CNOT11Q9UKZ1 510 aaKnown RBP17.81■□□□□ 0.44
CLN3-262ENST00000637699 ERVK-19Q9WJR5 959 aa17.81■□□□□ 0.44
CLN3-262ENST00000637699 MTO1Q9Y2Z2 717 aaKnown RBP17.81■□□□□ 0.44
CLN3-262ENST00000637699 PHGDHO43175 533 aaKnown RBP17.8■□□□□ 0.44
CLN3-262ENST00000637699 PRKRAO75569 313 aaKnown RBP17.8■□□□□ 0.44
CLN3-262ENST00000637699 SCELO95171 688 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 IL2RAP01589 272 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 C1QAP02745 245 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 EPXP11678 715 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 ALOX15P16050 662 aaPredicted RBP17.8■□□□□ 0.44
CLN3-262ENST00000637699 TIMP3P35625 211 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 AGFG1P52594 562 aaKnown RBP17.8■□□□□ 0.44
CLN3-262ENST00000637699 ZNF136P52737 540 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 PLIN5Q00G26 463 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 CRYZQ08257 329 aaKnown RBP17.8■□□□□ 0.44
CLN3-262ENST00000637699 PDIA2Q13087 525 aaKnown RBP17.8■□□□□ 0.44
CLN3-262ENST00000637699 ZNF267Q14586 743 aaPredicted RBP17.8■□□□□ 0.44
CLN3-262ENST00000637699 TBCCQ15814 346 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 CDKL4Q5MAI5 379 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 C18orf63Q68DL7 685 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 OR4C11Q6IEV9 310 aa17.8■□□□□ 0.44
CLN3-262ENST00000637699 TMEM64Q6YI46 380 aa17.8■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 66.4 ms