RNA–Protein interactions for RNA: ENST00000637038.1

SCN1A-214, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5

Gene SCN1A, Length 4,268 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-214ENST00000637038 H1F0P07305 194 aaKnown RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 YES1P07947 543 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PRKAR1AP10644 381 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TACR1P25103 407 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 HOXA9P31269 272 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 E2F1Q01094 437 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 SLC13A2Q13183 592 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ATP13A5Q4VNC0 1218 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 FAM209AQ5JX71 171 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 WDR45BQ5MNZ6 344 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 STEAP3Q658P3 488 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 SDE2Q6IQ49 451 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 SYCE2Q6PIF2 218 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TRAF7Q6Q0C0 670 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PTOV1Q86YD1 416 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 GDPD1Q8N9F7 314 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 SUMF1Q8NBK3 374 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 GPR26Q8NDV2 337 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 OR8J1Q8NGP2 316 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 GTPBP3Q969Y2 492 aaKnown RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 COQ8BQ96D53 544 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 EGLN2Q96KS0 407 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 SMIM14Q96QK8 99 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 DPH2Q9BQC3 489 aaPredicted RBP3.8□□□□□ -1.8
SCN1A-214ENST00000637038 ASPNQ9BXN1 380 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PCBD2Q9H0N5 130 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PRDM8Q9NQV8 689 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 GIMAP4Q9NUV9 329 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 TRAPPC4Q9Y296 219 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 CMAHPQ9Y471 501 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PCDHGB2Q9Y5G2 931 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 PCDHGA3Q9Y5H0 932 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 NUP210LQ5VU65 1888 aa3.8□□□□□ -1.8
SCN1A-214ENST00000637038 IGLV3-16A0A075B6K0 115 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NPIPB15A6NHN6 443 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NT5C1B-RDH14C9J2C7 533 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 FAM47E-STBD1D6RA91 191 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TMCC2O75069 709 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TRIM3O75382 744 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 WBP4O75554 376 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CER1O95813 267 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SOD2P04179 222 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SEMG1P04279 462 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 C6P13671 934 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NTSP30990 170 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TGFBR2P37173 567 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 LIPAP38571 399 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CENPAP49450 140 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 XKP51811 444 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NUDT6P53370 316 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 KCNJ10P78508 379 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 HEPACAMQ14CZ8 416 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SMN1Q16637 294 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 DESI1Q6ICB0 168 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 FAM131AQ6UXB0 335 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 LAPTM4BQ86VI4 370 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NRSN1Q8IZ57 195 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ADGRG2Q8IZP9 1017 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CLECL1Q8IZS7 167 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CRIPAKQ8N1N5 446 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ARL14EPQ8N8R7 260 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 DBF4BQ8NFT6 615 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 OR52J3Q8NH60 311 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CHAC2Q8WUX2 184 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 OR5P2Q8WZ92 322 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 RPL3LQ92901 407 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 LRIG1Q96JA1 1093 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CAMK1GQ96NX5 476 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 MCCC1Q96RQ3 725 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CNPPD1Q9BV87 410 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 FNDC11Q9BVV2 318 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 FAIM2Q9BWQ8 316 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 TMEM121BQ9BXQ6 578 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 NXF2Q9GZY0 626 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ABCG8Q9H221 673 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 POLE4Q9NR33 117 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 GPR83Q9NYM4 423 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 STMN3Q9NZ72 180 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 GDE1Q9NZC3 331 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 B4GALT6Q9UBX8 382 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 UTS2RQ9UKP6 389 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 MAP4K5Q9Y4K4 846 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 A0A1W2PRQ8 180 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ANKDD1BA6NHY2 528 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 LRRC72A6NJI9 287 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 AGAP14A8MT82 685 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SLC9A3R1O14745 358 aaPredicted RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 RAB36O95755 333 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 C6orf47O95873 294 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 C1GALT1C1LP0DN25 315 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ARAFP10398 606 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 OSMP13725 252 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CA5AP35218 305 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 ETV6P41212 452 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SGSHP51688 502 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 RPS13P62277 151 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SNRPGP62308 76 aaKnown RBP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 SLBPQ14493 270 aaKnown RBP eCLIP3.79□□□□□ -1.8
SCN1A-214ENST00000637038 BCL2A1Q16548 175 aa3.79□□□□□ -1.8
SCN1A-214ENST00000637038 CRB2Q5IJ48 1285 aa3.79□□□□□ -1.8
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms