RNA–Protein interactions for RNA: ENST00000636147.1

CLN3-244, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLN3, Length 3,832 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-244ENST00000636147 ATG13O75143 517 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 CSO75390 466 aaKnown RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 ARSBP15848 533 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 ATF6P18850 670 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 SDHBP21912 280 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 NTSP30990 170 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 PCGF2P35227 344 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 RPS25P62851 125 aaKnown RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 FCN2Q15485 313 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 LRIF1Q5T3J3 769 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 RAET1GQ6H3X3 334 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 GDPGP1Q6ZNW5 385 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 CCDC71Q8IV32 467 aaPredicted RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 CDK20Q8IZL9 346 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 FBXO22Q8NEZ5 403 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 OR4K5Q8NGD3 323 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 AP2M1Q96CW1 435 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 FUZQ9BT04 418 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 SPATA5L1Q9BVQ7 753 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 RIOK2Q9BVS4 552 aaKnown RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 TRMT61BQ9BVS5 477 aaKnown RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 C1QTNF3Q9BXJ4 246 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 SAP130Q9H0E3 1048 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 SUV39H2Q9H5I1 410 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 B4GALT6Q9UBX8 382 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 DRGXA6NNA5 263 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 RFPL3O75679 317 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 FGBP02675 491 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 PDGFAP04085 211 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 PRKACAP17612 351 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 CSRP3P50461 194 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 PSPHP78330 225 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 RING1Q06587 406 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 BTN1A1Q13410 526 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 GAB1Q13480 694 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 CBX2Q14781 532 aaPredicted RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 ESCO2Q56NI9 601 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 XKR4Q5GH76 650 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 APCDD1Q8J025 514 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 TMEM19Q96HH6 336 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 GAL3ST1Q99999 423 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 SORBS1Q9BX66 1292 aaKnown RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 GLTPQ9NZD2 209 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 RABL2AQ9UBK7 228 aaPredicted RBP10.53□□□□□ -0.72
CLN3-244ENST00000636147 ENTPD4Q9Y227 616 aa10.53□□□□□ -0.72
CLN3-244ENST00000636147 WNK3Q9BYP7 1800 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 ZNF670-ZNF695F2Z2N8 137 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 ZNF780AO75290 641 aaPredicted RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 SCG5P05408 212 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 RB1P06400 928 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 CSF3P09919 207 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 SAGP10523 405 aaPredicted RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 GJA1P17302 382 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 DDCP20711 480 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 KIR2DL3P43628 341 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 ZFP36L2P47974 494 aaKnown RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 MTNR1AP48039 350 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 VSX2P58304 361 aaPredicted RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 ARHGEF6Q15052 776 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 SFRP4Q6FHJ7 346 aaPredicted RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 ADNP2Q6IQ32 1131 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 TPRG1Q6ZUI0 275 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 Q6ZVU0 165 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 COMMD6Q7Z4G1 85 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 PTOV1Q86YD1 416 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 FTMTQ8N4E7 242 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 OR52N2Q8NGI0 321 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 DNAJA4Q8WW22 397 aaPredicted RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 RBCK1Q9BYM8 510 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 RBFOX1Q9NWB1 397 aaKnown RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 SPG21Q9NZD8 308 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 CNOT2Q9NZN8 540 aaKnown RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 DNMT3BQ9UBC3 853 aaKnown RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 SLC6A14Q9UN76 642 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 MAB21L2Q9Y586 359 aa10.52□□□□□ -0.72
CLN3-244ENST00000636147 GREB1LQ9C091 1923 aaPredicted RBP10.52□□□□□ -0.72
CLN3-244ENST00000636147 A0A075B6Q4 140 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 TEX13CA0A0J9YWL9 993 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 ANHXE9PGG2 379 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 L7N2F9 121 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 POLR1CO15160 346 aaPredicted RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 SMAD9O15198 467 aaKnown RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 KLK8O60259 260 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 STC2O76061 302 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 OR12D1P0DN82 309 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 LHCGRP22888 699 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 AOAHP28039 575 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 GABRR2P28476 465 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 WNT4P56705 351 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 SNTA1Q13424 505 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 LASP1Q14847 261 aaKnown RBP10.52□□□□□ -0.73
CLN3-244ENST00000636147 NDUFAF6Q330K2 333 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 SAXO2Q658L1 398 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 OLIG3Q7RTU3 272 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 C17orf64Q86WR6 236 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 SLC38A6Q8IZM9 456 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 C10orf53Q8N6V4 93 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 NLGN2Q8NFZ4 835 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 CEP76Q8TAP6 659 aa10.52□□□□□ -0.73
CLN3-244ENST00000636147 APH1BQ8WW43 257 aa10.52□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 51.4 ms