RNA–Protein interactions for RNA: ENST00000622516.4

CUX1-221, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 2,990 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-221ENST00000622516 TGFBR1P36897 503 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 TNFRSF4P43489 277 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 MASP1P48740 699 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 PCBP3P57721 371 aaKnown RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 NFATC3Q12968 1075 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 KEAP1Q14145 624 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 MAPK11Q15759 364 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 CRB2Q5IJ48 1285 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 TMEM92Q6UXU6 159 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 TSPYL5Q86VY4 417 aaPredicted RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 LSM14AQ8ND56 463 aaKnown RBP10.07□□□□□ -0.8
CUX1-221ENST00000622516 SETD9Q8NE22 299 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 LCN9Q8WX39 176 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 PATE1Q8WXA2 126 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 OR5P2Q8WZ92 322 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 PROX1Q92786 737 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 NRBF2Q96F24 287 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 MRGPRX1Q96LB2 322 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 PREBQ9HCU5 417 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 EQTNQ9NQ60 294 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP10.07□□□□□ -0.82e-10■■■■□ 23.5
CUX1-221ENST00000622516 RNF6Q9Y252 685 aa10.07□□□□□ -0.8
CUX1-221ENST00000622516 TOR1BO14657 336 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 SLC28A2O43868 658 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 GADD45GO95257 159 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 RASGRP1O95267 797 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 GASTP01350 101 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 TFPTP0C1Z6 253 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 CCDC159P0C7I6 412 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 GRK3P35626 688 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ACTR1BP42025 376 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 MLLT10P55197 1068 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 NUP107P57740 925 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ACTR1AP61163 376 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 SLC35A2P78381 396 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 LSM11P83369 360 aaKnown RBP eCLIP10.06□□□□□ -0.85e-6■■■□□ 16.8
CUX1-221ENST00000622516 DMPKQ09013 629 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 RBBP4Q09028 425 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ADAM15Q13444 863 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 AGERQ15109 404 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 SAXO2Q658L1 398 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 KLHL17Q6TDP4 642 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 DEF8Q6ZN54 512 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 COMTD1Q86VU5 262 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 LACC1Q8IV20 430 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 CCDC103Q8IW40 242 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ACOT4Q8N9L9 421 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 GPR32P1Q8NGA4 272 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 OR4D11Q8NGI4 311 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 OR2L8Q8NGY9 312 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ZNF420Q8TAQ5 688 aaPredicted RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 PHF10Q8WUB8 498 aaKnown RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 FBLIM1Q8WUP2 373 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 MS4A6EQ96DS6 147 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 NEURL3Q96EH8 262 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 HSPBAP1Q96EW2 488 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 C16orf58Q96GQ5 468 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 COL21A1Q96P44 957 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 DOK1Q99704 481 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 TIMM29Q9BSF4 260 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 PRR14Q9BWN1 585 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 LMAN2LQ9H0V9 348 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 DDX31Q9H8H2 851 aaKnown RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 TIMMDC1Q9NPL8 285 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ZCCHC3Q9NUD5 404 aaKnown RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 TSC22D4Q9Y3Q8 395 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 PIAS3Q9Y6X2 628 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 A0A0A6YYD5 115 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 TRBV4-1A0A0J9YWV2 114 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 H3BQ06 376 aaPredicted RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 NDUFS2O75306 463 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 BCAS1O75363 584 aaPredicted RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 LCKP06239 509 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ACADMP11310 421 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 JUNBP17275 347 aaPredicted RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 TTKP33981 857 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 SH3BGRP55822 239 aaPredicted RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 HPCAP84074 193 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 IL18R1Q13478 541 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 LASP1Q14847 261 aaKnown RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 MICAQ29983 383 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 TOR1AIP1Q5JTV8 583 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 TMEM184AQ6ZMB5 413 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 AQP11Q8NBQ7 271 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 OR4C15Q8NGM1 316 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 OR10G6Q8NH81 332 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 RPLP0P6Q8NHW5 317 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 GEMIN6Q8WXD5 167 aaKnown RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 POP5Q969H6 163 aaKnown RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 FKBP10Q96AY3 582 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ZBED6CLQ96FA7 236 aaPredicted RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 TUBA1CQ9BQE3 449 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 OR51I1Q9H343 314 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 SCN3BQ9NY72 215 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ZNF624Q9P2J8 865 aaPredicted RBP10.06□□□□□ -0.8
CUX1-221ENST00000622516 N6AMT1Q9Y5N5 214 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 GMEB1Q9Y692 573 aa10.06□□□□□ -0.8
CUX1-221ENST00000622516 ZNF99A8MXY4 864 aaPredicted RBP10.05□□□□□ -0.8
CUX1-221ENST00000622516 DNAJB6O75190 326 aa10.05□□□□□ -0.8
CUX1-221ENST00000622516 SOX14O95416 240 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 60.1 ms