RNA–Protein interactions for RNA: ENST00000616140.1

CPSF1-212, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,494 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-212ENST00000616140 RGPD1P0DJD0 1748 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 CPED1A4D0V7 1026 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 NPIPB15A6NHN6 443 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-212ENST00000616140 A8MU76 341 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 VEGFDO43915 354 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 SCGNO76038 276 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 SRCP12931 536 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 GABRA3P34903 492 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 DNM1P34Q6PK57 102 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 GATSQ8NAP1 163 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 OR52N2Q8NGI0 321 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 GPR150Q8NGU9 434 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 OR8K5Q8NH50 307 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 TFAP2CQ92754 450 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 ZNF597Q96LX8 424 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 HDHD5Q9BXW7 423 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 SMURF1Q9HCE7 757 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 ZDHHC7Q9NXF8 308 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 ENPP4Q9Y6X5 453 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 PHLPP1O60346 1717 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 METTL21EPA6NDL7 271 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 C6P13671 934 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 RAB2AP61019 212 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 OR52E8Q6IFG1 317 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 TMEM107Q6UX40 140 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 PRSS48Q7RTY5 328 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 GID4Q8IVV7 300 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 INO80EQ8NBZ0 244 aaPredicted RBP13.4□□□□□ -0.26
CPSF1-212ENST00000616140 RAB7BQ96AH8 199 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 OR2M4Q96R27 311 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 P2RY13Q9BPV8 354 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 PCDHGA2Q9Y5H1 932 aa13.4□□□□□ -0.26
CPSF1-212ENST00000616140 EMC8O43402 210 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 RLN2P04090 185 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 NAA10P41227 235 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 MAP2K3P46734 347 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 IRF5Q13568 498 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 TAZQ16635 292 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF534Q76KX8 674 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ACBD7Q8N6N7 88 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 FIBINQ8TAL6 211 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 MOAP1Q96BY2 351 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ABCG5Q9H222 651 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 RDH8Q9NYR8 311 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 STOX2Q9P2F5 926 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 IGLON5A6NGN9 336 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 BCAS1O75363 584 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 LATS1O95835 1130 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 GSTT2P0CG29 244 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 AGXTP21549 392 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 PPP5CP53041 499 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 OC90Q02509 493 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ITPRIPL2Q3MIP1 535 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 CLLU1OSQ5K130 101 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 GALNT7Q86SF2 657 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 MDGA1Q8NFP4 955 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 OR52P1PQ8NH57 321 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 SUN3Q8TAQ9 357 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ZBTB42B2RXF5 422 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 H3BMQ9 156 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 KAT7O95251 611 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 GADD45AP24522 165 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 MAGEA2P43356 314 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 VSX2P58304 361 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 CDK5R2Q13319 367 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 PKDCCQ504Y2 493 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 PIWIL3Q7Z3Z3 882 aaKnown RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 FAM217AQ8IXS0 508 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 OR6N2Q8NGY6 317 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 SETD7Q8WTS6 366 aaKnown RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 GATAD2BQ8WXI9 593 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 COG8Q96MW5 612 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ATOH8Q96SQ7 321 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 GRHPRQ9UBQ7 328 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 LAMP5Q9UJQ1 280 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 GPR45Q9Y5Y3 372 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 C1orf226A1L170 272 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 EIF3FO00303 357 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 SOX1O00570 391 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 EIF1AYO14602 144 aaKnown RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 CSTAP01040 98 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 SDC1P18827 310 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 RBM34P42696 430 aaKnown RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ZNF81P51508 661 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 SEC23BQ15437 767 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ARHGAP40Q5TG30 622 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 CEACAM19Q7Z692 300 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 PHF6Q8IWS0 365 aaKnown RBP eCLIP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 PIAS4Q8N2W9 510 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 RFT1Q96AA3 541 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ACTL8Q9H568 366 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 CREBZFQ9NS37 354 aa13.39□□□□□ -0.27
CPSF1-212ENST00000616140 ST6GALNAC1Q9NSC7 600 aaPredicted RBP13.39□□□□□ -0.27
CPSF1-212ENST00000616140 TOPAZ1Q8N9V7 1692 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 SETD1AO15047 1707 aaKnown RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 A0A1W2PQU0 124 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 TPD52L2O43399 206 aaKnown RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 GATBO75879 557 aaKnown RBP13.38□□□□□ -0.27
CPSF1-212ENST00000616140 ADAP00813 363 aa13.38□□□□□ -0.27
CPSF1-212ENST00000616140 PDHA2P29803 388 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms