RNA–Protein interactions for RNA: ENST00000602140.1

RPS28-204, Transcript of ribosomal protein S28, humanhuman

TSL 1 (best)

Gene RPS28, Length 912 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPS28-204ENST00000602140 UBTD2Q8WUN7 234 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 TANKQ92844 425 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 SARAFQ96BY9 339 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 NXNL1Q96CM4 212 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 FBXL20Q96IG2 436 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 ART5Q96L15 291 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 MTERF1Q99551 399 aaKnown RBP12.14□□□□□ -0.47
RPS28-204ENST00000602140 CENPKQ9BS16 269 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 CNPPD1Q9BV87 410 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 EXO5Q9H790 373 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 DMRT3Q9NQL9 472 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 IGSF5Q9NSI5 407 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 ALKBH4Q9NXW9 302 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 ADGRE2Q9UHX3 823 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 PHF11Q9UIL8 331 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 ANGPTL3Q9Y5C1 460 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 PHF3Q92576 2039 aaKnown RBP12.14□□□□□ -0.47
RPS28-204ENST00000602140 EML6Q6ZMW3 1958 aa12.14□□□□□ -0.47
RPS28-204ENST00000602140 TRGV5A0A0B4J1U4 118 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 A0A0G2JNJ9 132 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 WASHC1A8K0Z3 465 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 PLPP1O14494 284 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 KLK8O60259 260 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 WDR1O75083 606 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 NADKO95544 446 aaPredicted RBP12.13□□□□□ -0.47
RPS28-204ENST00000602140 MTHFD2P13995 350 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 ALOX15P16050 662 aaPredicted RBP12.13□□□□□ -0.47
RPS28-204ENST00000602140 TLX1P31314 330 aaPredicted RBP12.13□□□□□ -0.47
RPS28-204ENST00000602140 ADH7P40394 386 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 BUD31P41223 144 aaPredicted RBP12.13□□□□□ -0.47
RPS28-204ENST00000602140 PIK3CBP42338 1070 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 KCNJ2P63252 427 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 TNFRSF17Q02223 184 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 C2orf54Q08AI8 447 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 MYBPHQ13203 477 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 BIKQ13323 160 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 C1orf185Q5T7R7 199 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 PRAMEF20Q5VT98 475 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 CES4AQ5XG92 561 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 LYPD8Q6UX82 237 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 TMEM200AQ86VY9 491 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 LIX1LQ8IVB5 337 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 ST13P4Q8IZP2 240 aaPredicted RBP12.13□□□□□ -0.47
RPS28-204ENST00000602140 CLYBLQ8N0X4 340 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 ZCCHC7Q8N3Z6 543 aaKnown RBP12.13□□□□□ -0.47
RPS28-204ENST00000602140 SLC15A4Q8N697 577 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 FAM13CQ8NE31 585 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 FBF1Q8TES7 1133 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 PAQR8Q8TEZ7 354 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 KCTD4Q8WVF5 259 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 SPACA9Q96E40 222 aaPredicted RBP12.13□□□□□ -0.47
RPS28-204ENST00000602140 SH2D2AQ9NP31 389 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.13□□□□□ -0.47
RPS28-204ENST00000602140 Q9UFV3 132 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 KCNN3Q9UGI6 736 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 PYCARDQ9ULZ3 195 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 PCDHGA11Q9Y5H2 935 aa12.13□□□□□ -0.47
RPS28-204ENST00000602140 IQANK1A0A1B0GTG1 560 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 SYCE1LA8MT33 242 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 PROM1O43490 865 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 OR10H2O60403 315 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 HCN1O60741 890 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 RFPL3SP0C7P2 107 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 ENDOUP21128 410 aaKnown RBP12.12□□□□□ -0.47
RPS28-204ENST00000602140 STX2P32856 288 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 MAGEA4P43358 317 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 RPS13P62277 151 aaKnown RBP12.12□□□□□ -0.47
RPS28-204ENST00000602140 HERVK_113P63132 956 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 ERVK-8P63133 956 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 TBL3Q12788 808 aaKnown RBP12.12□□□□□ -0.47
RPS28-204ENST00000602140 ZNF267Q14586 743 aaPredicted RBP12.12□□□□□ -0.47
RPS28-204ENST00000602140 LIPJQ5W064 366 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 SLC29A4Q7RTT9 530 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 CENPLQ8N0S6 344 aaPredicted RBP12.12□□□□□ -0.47
RPS28-204ENST00000602140 FBXO25Q8TCJ0 367 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 GAL3ST4Q96RP7 486 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 ERVK-6Q9BXR3 956 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 ZNF703Q9H7S9 590 aaPredicted RBP12.12□□□□□ -0.47
RPS28-204ENST00000602140 ACTR8Q9H981 624 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 PROK2Q9HC23 129 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 ZFP64Q9NPA5 681 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 SPRR3Q9UBC9 169 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 BOKQ9UMX3 212 aaPredicted RBP12.12□□□□□ -0.47
RPS28-204ENST00000602140 ERVK-19Q9WJR5 959 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 ACOT9Q9Y305 439 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 UTP11Q9Y3A2 253 aaKnown RBP12.12□□□□□ -0.47
RPS28-204ENST00000602140 DNAJC13O75165 2243 aa12.12□□□□□ -0.47
RPS28-204ENST00000602140 INTS1Q8N201 2190 aaKnown RBP12.12□□□□□ -0.47
RPS28-204ENST00000602140 A0A1W2PR48 441 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 LRRC14BA6NHZ5 514 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 LRRC3CA6NJW4 275 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 GLOD5A6NK44 160 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 TMPRSS11DO60235 418 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 EEDO75530 441 aaKnown RBP12.11□□□□□ -0.47
RPS28-204ENST00000602140 ZWINTO95229 277 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 LRATO95237 230 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 GPR75O95800 540 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 FBXO45P0C2W1 286 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 GFAPP14136 432 aa12.11□□□□□ -0.47
RPS28-204ENST00000602140 GABRA1P14867 456 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms