RNA–Protein interactions for RNA: ENST00000600689.1

UPF1-210, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,084 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-210ENST00000600689 PEX5LQ8IYB4 626 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 UPRTQ96BW1 309 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 ART5Q96L15 291 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 HHIPQ96QV1 700 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 HDHD2Q9H0R4 259 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 C2orf92A0A1B0GVN3 265 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 ALAS2P22557 587 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 ERP29P30040 261 aaKnown RBP17.45■□□□□ 0.38
UPF1-210ENST00000600689 OPRD1P41143 372 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 HTRA3P83110 453 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 HEPACAMQ14CZ8 416 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 GGTA1PQ4G0N0 100 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 CEACAM20Q6UY09 585 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 MSANTD1Q6ZTZ1 278 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 ZNF461Q8TAF7 563 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 WDR20Q8TBZ3 569 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 REPS1Q96D71 796 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 LRR1Q96L50 414 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 ACAT2Q9BWD1 397 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 CDCP1Q9H5V8 836 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 B3GAT2Q9NPZ5 323 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 LSM2Q9Y333 95 aaKnown RBP17.45■□□□□ 0.38
UPF1-210ENST00000600689 MYO10Q9HD67 2058 aa17.45■□□□□ 0.38
UPF1-210ENST00000600689 TRBV5-4A0A0C4DH59 114 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 HEPACAM2A8MVW5 462 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 HOXA2O43364 376 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 C8GP07360 202 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 KHDRBS1Q07666 443 aaKnown RBP eCLIP17.44■□□□□ 0.38
UPF1-210ENST00000600689 LAPTM4BQ86VI4 370 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 OR8H3Q8N146 312 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 SLC37A3Q8NCC5 494 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 DCLRE1CQ96SD1 692 aaKnown RBP17.44■□□□□ 0.38
UPF1-210ENST00000600689 WRAP53Q9BUR4 548 aaKnown RBP17.44■□□□□ 0.38
UPF1-210ENST00000600689 ANKRA2Q9H9E1 313 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 C5orf42Q9H799 3197 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 WASHC1A8K0Z3 465 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 RHAGQ02094 409 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 DCST1Q5T197 706 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 DNAJC5GQ8N7S2 189 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 OR6C4Q8NGE1 309 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 KATNB1Q9BVA0 655 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 PRR14Q9BWN1 585 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 YIPF1Q9Y548 306 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 A0A0C4DFX4 3053 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 LOC105371267A0A1B0GV96 52 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 SH3D21A4FU49 640 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 A8MUA0 341 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 EFEMP2O95967 443 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 CH25HO95992 272 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 DDX5P17844 614 aaKnown RBP17.44■□□□□ 0.38
UPF1-210ENST00000600689 AP1S1P61966 158 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 PTSQ03393 145 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 TLE2Q04725 743 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 MPEG1Q2M385 716 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 GPR33Q49SQ1 333 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 SYTL3Q4VX76 610 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 CLEC12AQ5QGZ9 265 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 TRIM40Q6P9F5 258 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 NANOGP1Q8N7R0 232 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 ARL14EPQ8N8R7 260 aaPredicted RBP17.44■□□□□ 0.38
UPF1-210ENST00000600689 NEIL2Q969S2 332 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 KCTD7Q96MP8 289 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 MVB12BQ9H7P6 319 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 C1GALT1Q9NS00 363 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 ING3Q9NXR8 418 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 CLEC4AQ9UMR7 237 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 CORO2BQ9UQ03 480 aa17.44■□□□□ 0.38
UPF1-210ENST00000600689 TRAV6A0A075B6T7 132 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 NTN1O95631 604 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 SYPP08247 313 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 PPIBP23284 216 aaKnown RBP17.43■□□□□ 0.38
UPF1-210ENST00000600689 TIA1P31483 386 aaKnown RBP eCLIP17.43■□□□□ 0.38
UPF1-210ENST00000600689 MLLT3P42568 568 aaPredicted RBP17.43■□□□□ 0.38
UPF1-210ENST00000600689 IL20RBQ6UXL0 311 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 USP45Q70EL2 814 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 COMMD6Q7Z4G1 85 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 PHF6Q8IWS0 365 aaKnown RBP eCLIP17.43■□□□□ 0.38
UPF1-210ENST00000600689 ZNF740Q8NDX6 193 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 TM9SF4Q92544 642 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 SEMA3GQ9NS98 782 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 NDUFB11Q9NX14 153 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 BTNL2Q9UIR0 455 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 ZNF222Q9UK12 451 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 MAPRE3Q9UPY8 281 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 SH2B3Q9UQQ2 575 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 CIB4A0PJX0 185 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 RTCAO00442 366 aaKnown RBP17.43■□□□□ 0.38
UPF1-210ENST00000600689 SEMA7AO75326 666 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 GSTM1P09488 218 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 NAT1P18440 290 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 FCHO2Q0JRZ9 810 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 MAP4K2Q12851 820 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 PXDC1Q5TGL8 231 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 FAM205BPQ63HN1 556 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 UNC5DQ6UXZ4 953 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 TMEM150AQ86TG1 271 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 TMEM145Q8NBT3 493 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 OR52N2Q8NGI0 321 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 SLC9A6Q92581 669 aa17.43■□□□□ 0.38
UPF1-210ENST00000600689 CLP1Q92989 425 aaKnown RBP17.43■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.3 ms