RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 M1APQ8TC57 530 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 RBM18Q96H35 190 aaKnown RBP18.08■□□□□ 0.48
UPF1-209ENST00000600310 MAELQ96JY0 434 aaKnown RBP18.08■□□□□ 0.48
UPF1-209ENST00000600310 TSSK3Q96PN8 268 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 C1orf50Q9BV19 199 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 ASIC5Q9NY37 505 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 BAIAP2L1Q9UHR4 511 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 UTS2RQ9UKP6 389 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 PPIEQ9UNP9 301 aaKnown RBP18.08■□□□□ 0.48
UPF1-209ENST00000600310 EIF3LQ9Y262 564 aaKnown RBP18.08■□□□□ 0.48
UPF1-209ENST00000600310 USH1CQ9Y6N9 552 aa18.08■□□□□ 0.48
UPF1-209ENST00000600310 TCP11X1B4DZS4 312 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 ERVH48-1M5A8F1 160 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 CPMP14384 443 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 TNNI3P19429 210 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 ITGA3P26006 1051 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 GALNSP34059 522 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 XKP51811 444 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 AP2B1P63010 937 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 ERVK-8P63133 956 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 VWA5B1Q5TIE3 1220 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 OGFOD2Q6N063 350 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 LIX1Q8N485 282 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 AMER2Q8N7J2 671 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 PTPMT1Q8WUK0 201 aaPredicted RBP18.07■□□□□ 0.48
UPF1-209ENST00000600310 DAZLQ92904 295 aaKnown RBP18.07■□□□□ 0.48
UPF1-209ENST00000600310 KLHL29Q96CT2 875 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 ZNF681Q96N22 645 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 ARHGAP9Q9BRR9 750 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 CCDC134Q9H6E4 229 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 WDR55Q9H6Y2 383 aaPredicted RBP18.07■□□□□ 0.48
UPF1-209ENST00000600310 MMP25Q9NPA2 562 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 MIEF1Q9NQG6 463 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 TAS2R7Q9NYW3 318 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 NOP53Q9NZM5 478 aaKnown RBP18.07■□□□□ 0.48
UPF1-209ENST00000600310 CLCA3PQ9Y6N3 262 aa18.07■□□□□ 0.48
UPF1-209ENST00000600310 A0A1W2PS29 197 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 A6NL46 340 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 OR10H2O60403 315 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 EDF1O60869 148 aaKnown RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 ERAL1O75616 437 aaKnown RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 TGDSO95455 350 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 CELA2AP08217 269 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 COX7A2P14406 83 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 PORP16435 677 aaPredicted RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 CSNK2A2P19784 350 aaPredicted RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 MDH1P40925 334 aaKnown RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 GPR143P51810 404 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 GUCY1A3Q02108 690 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 MYBPC3Q14896 1274 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 TICAM1Q8IUC6 712 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 SAMD14Q8IZD0 417 aaPredicted RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 B3GNT7Q8NFL0 401 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 FDCSPQ8NFU4 85 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 OR14A16Q8NHC5 309 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 PPWD1Q96BP3 646 aaKnown RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 CNRIP1Q96F85 164 aaPredicted RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 WBP1Q96G27 269 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 ZNF764Q96H86 408 aaPredicted RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 THOC3Q96J01 351 aaKnown RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 LHPPQ9H008 270 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 ADNPQ9H2P0 1102 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 REEP4Q9H6H4 257 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 SLC35C2Q9NQQ7 365 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 TUBD1Q9UJT1 453 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 PCDHGA9Q9Y5G4 932 aaKnown RBP18.06■□□□□ 0.48
UPF1-209ENST00000600310 ZNF780BQ9Y6R6 833 aa18.06■□□□□ 0.48
UPF1-209ENST00000600310 C17orf105B2RV13 164 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 MKRN2OSH3BPM6 223 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 TBX19O60806 448 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 FAM87AP0C7U9 286 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 G6PDP11413 515 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 EPHA3P29320 983 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 FEN1P39748 380 aaKnown RBP18.05■□□□□ 0.48
UPF1-209ENST00000600310 CEBPEQ15744 281 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 SPRED3Q2MJR0 410 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 ZNF750Q32MQ0 723 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 SLC9B1Q4ZJI4 515 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 IRAK1BP1Q5VVH5 260 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 JMJD6Q6NYC1 403 aaPredicted RBP18.05■□□□□ 0.48
UPF1-209ENST00000600310 EPGNQ6UW88 154 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 MORN4Q8NDC4 146 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 CLHC1Q8NHS4 586 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 ACTRT2Q8TDY3 377 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 ELP5Q8TE02 316 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 PSMF1Q92530 271 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 EXOSC8Q96B26 276 aaKnown RBP18.05■□□□□ 0.48
UPF1-209ENST00000600310 SLC25A23Q9BV35 468 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 GIMAP4Q9NUV9 329 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 GPR83Q9NYM4 423 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 LOC400499M0QZD8 3231 aa18.05■□□□□ 0.48
UPF1-209ENST00000600310 GOLGA8QA0A0J9YX86 632 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 GOLGA8OA6NCC3 632 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 GOLGA8NF8WBI6 632 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 AKAP10O43572 662 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 KLHL41O60662 606 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 DIAPH2O60879 1101 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 LRATO95237 230 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 DDAH2O95865 285 aa18.04■□□□□ 0.48
UPF1-209ENST00000600310 ATP1B1P05026 303 aa18.04■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 48.2 ms