RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 CES1P1Q9UKY3 287 aa15.01□□□□□ -0.01
TRIM28-213ENST00000598355 CCDC151A5D8V7 595 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 WASHC1A8K0Z3 465 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 PGRMC2O15173 223 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 TRIM13O60858 407 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 VPS4BO75351 444 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 COX7A2P14406 83 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 TDGF1P3P51864 188 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 RAE1P78406 368 aaKnown RBP15□□□□□ -0.01
TRIM28-213ENST00000598355 SRSF1Q07955 248 aaKnown RBP eCLIP15□□□□□ -0.01
TRIM28-213ENST00000598355 OR1C1Q15619 314 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 KRT71Q3SY84 523 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 SPIN4Q56A73 249 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 CCNYL2Q5T2Q4 361 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 SLC48A1Q6P1K1 146 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 DGAT2L6Q6ZPD8 337 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 TRIM46Q7Z4K8 759 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 ZNF321PQ8N8H1 164 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 CCDC63Q8NA47 563 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 FAR1Q8WVX9 515 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 TM4SF18Q96CE8 201 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 SMC6Q96SB8 1091 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP15□□□□□ -0.01
TRIM28-213ENST00000598355 SSU72Q9NP77 194 aaKnown RBP15□□□□□ -0.01
TRIM28-213ENST00000598355 VPS4AQ9UN37 437 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 CCL27Q9Y4X3 112 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 PCDHA9Q9Y5H5 950 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 COL12A1Q99715 3063 aa15□□□□□ -0.01
TRIM28-213ENST00000598355 SPTAN1Q13813 2472 aaKnown RBP14.99□□□□□ -0.01
TRIM28-213ENST00000598355 A0A1W2PS29 197 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 ARHGAP10A1A4S6 786 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 C1orf226A1L170 272 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 ASPDHA6ND91 283 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 GLOD5A6NK44 160 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 FCHO1O14526 889 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 GUCY1B2O75343 617 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 SPAG7O75391 227 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 ITGA10O75578 1167 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 ZFAND5O76080 213 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 CBX6O95503 412 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 CLPSP04118 112 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 SLC35E2P0CK97 266 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 GNLYP22749 145 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 PRPH2P23942 346 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 ALDH3A1P30838 453 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 HLCSP50747 726 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 HK2P52789 917 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 HMGCS1Q01581 520 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 ZNF766Q5HY98 468 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 CFAP157Q5JU67 520 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 FAM180AQ6UWF9 173 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 HSDL2Q6YN16 418 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 ST6GALNAC3Q8NDV1 305 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 SUN3Q8TAQ9 357 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 NUBPLQ8TB37 319 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 APIPQ96GX9 242 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 SENP5Q96HI0 755 aaPredicted RBP14.99□□□□□ -0.01
TRIM28-213ENST00000598355 ART5Q96L15 291 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 ZIM3Q96PE6 472 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 MECRQ9BV79 373 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 OR8D2Q9GZM6 311 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 AGPAT4Q9NRZ5 378 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 MYOTQ9UBF9 498 aa14.99□□□□□ -0.01
TRIM28-213ENST00000598355 PCDH7O60245 1069 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 NPHS1O60500 1241 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 UROSP10746 265 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 TIA1P31483 386 aaKnown RBP eCLIP14.98□□□□□ -0.01
TRIM28-213ENST00000598355 GSTM5P46439 218 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 CYB561P49447 251 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 RNF4P78317 190 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 ACSM2AQ08AH3 577 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 ASPHQ12797 758 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 ACSM2BQ68CK6 577 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 LRIG3Q6UXM1 1119 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 C9orf40Q8IXQ3 194 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 MMP21Q8N119 569 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 HORMAD2Q8N7B1 307 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 BCORP1Q8N888 145 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 NR4A3Q92570 626 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 PGM2Q96G03 612 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 RBM18Q96H35 190 aaKnown RBP14.98□□□□□ -0.01
TRIM28-213ENST00000598355 METTL2AQ96IZ6 378 aaKnown RBP14.98□□□□□ -0.01
TRIM28-213ENST00000598355 HES7Q9BYE0 225 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 CXorf21Q9HAI6 301 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 RYDENQ9NUL5 291 aaKnown RBP14.98□□□□□ -0.01
TRIM28-213ENST00000598355 ANKRD10Q9NXR5 420 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 LRFN1Q9P244 771 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 COPS7AQ9UBW8 275 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 YARS2Q9Y2Z4 477 aaKnown RBP14.98□□□□□ -0.01
TRIM28-213ENST00000598355 ACTL7BQ9Y614 415 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 SPTBN1Q01082 2364 aaKnown RBP14.98□□□□□ -0.01
TRIM28-213ENST00000598355 GTF3C1Q12789 2109 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 DOPEY1Q5JWR5 2465 aa14.98□□□□□ -0.01
TRIM28-213ENST00000598355 HRKO00198 91 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 RGS16O15492 202 aaPredicted RBP14.97□□□□□ -0.01
TRIM28-213ENST00000598355 NME2P1O60361 137 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 SLC25A12O75746 678 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 RSL1D1O76021 490 aaKnown RBP14.97□□□□□ -0.01
TRIM28-213ENST00000598355 RASAL1O95294 804 aa14.97□□□□□ -0.01
TRIM28-213ENST00000598355 ATP1B1P05026 303 aa14.97□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 51.5 ms