RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 C1orf226A1L170 272 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 GOLGA6L10A6NI86 522 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 TMEM233B4DJY2 109 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 DYRK3O43781 588 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 PRKNO60260 465 aaPredicted RBP13.56□□□□□ -0.24
VRK3-206ENST00000594090 OR10H2O60403 315 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 RSL1D1O76021 490 aaKnown RBP13.56□□□□□ -0.24
VRK3-206ENST00000594090 DHRS4L1P0CG22 281 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 PIK3R1P27986 724 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 ARRB2P32121 409 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 MLF1P58340 268 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 FOXK1P85037 733 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 BTKQ06187 659 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 TUBA3CQ13748 450 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 MPP2Q14168 576 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 INPP5JQ15735 1006 aaPredicted RBP13.56□□□□□ -0.24
VRK3-206ENST00000594090 SPRED3Q2MJR0 410 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 SPDYAQ5MJ70 313 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 SLC48A1Q6P1K1 146 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 TUBA3EQ6PEY2 450 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 NUDCD3Q8IVD9 361 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 OR4K14Q8NGD5 310 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 ZNF721Q8TF20 911 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 THAP3Q8WTV1 239 aaPredicted RBP13.56□□□□□ -0.24
VRK3-206ENST00000594090 MIB2Q96AX9 1013 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 FBXL20Q96IG2 436 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 FAIM2Q9BWQ8 316 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 EBPLQ9BY08 206 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 TMBIM4Q9HC24 238 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 KCNK9Q9NPC2 374 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 CES1P1Q9UKY3 287 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 CCL27Q9Y4X3 112 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 DNAJC15Q9Y5T4 150 aa13.56□□□□□ -0.24
VRK3-206ENST00000594090 ZNF462Q96JM2 2506 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 WDR91A4D1P6 747 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 SLC28A1O00337 649 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 BIRC5O15392 142 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 ZFAND5O76080 213 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 CHEK2O96017 543 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 FGF4P08620 206 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 SLC35E2P0CK97 266 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 PRPH2P23942 346 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 GALNSP34059 522 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 ST13P50502 369 aaKnown RBP13.55□□□□□ -0.24
VRK3-206ENST00000594090 SH2D4BQ5SQS7 431 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 HSDL2Q6YN16 418 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 C16orf78Q8WTQ4 265 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 TWIST2Q8WVJ9 160 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 TLCD1Q96CP7 247 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 SNRNP40Q96DI7 357 aaKnown RBP13.55□□□□□ -0.24
VRK3-206ENST00000594090 ART5Q96L15 291 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 SIGLEC12Q96PQ1 595 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 UTP23Q9BRU9 249 aaKnown RBP13.55□□□□□ -0.24
VRK3-206ENST00000594090 TUBB1Q9H4B7 451 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 HEY2Q9UBP5 337 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 COPS7AQ9UBW8 275 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 DLGAP4Q9Y2H0 992 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 TRAF6Q9Y4K3 522 aa13.55□□□□□ -0.24
VRK3-206ENST00000594090 NPIPB8E9PQR5 432 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 HRKO00198 91 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 CDK2AP1O14519 115 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 FCHO1O14526 889 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 IGKV3-11P04433 115 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 IL3P08700 152 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 NEFHP12036 1026 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 CD96P40200 585 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 GSTM5P46439 218 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 ALDH9A1P49189 494 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 MAGOHP61326 146 aaKnown RBP13.54□□□□□ -0.24
VRK3-206ENST00000594090 ZNF763Q0D2J5 394 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 CHI3L2Q15782 390 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 IGFBP7Q16270 282 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 ZNF750Q32MQ0 723 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 UGT3A2Q3SY77 523 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 ZNF468Q5VIY5 522 aaPredicted RBP13.54□□□□□ -0.24
VRK3-206ENST00000594090 CES4AQ5XG92 561 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 HOMEZQ8IX15 550 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 CLYBLQ8N0X4 340 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 CISD2Q8N5K1 135 aaKnown RBP13.54□□□□□ -0.24
VRK3-206ENST00000594090 MDS2Q8NDY4 140 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 OR2T11Q8NH01 316 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 OR8K3Q8NH51 312 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 PPP1R14CQ8TAE6 165 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 SUN3Q8TAQ9 357 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 FAM76AQ8TAV0 307 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 AGR3Q8TD06 166 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 DOK4Q8TEW6 326 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 RIT1Q92963 219 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 SENP5Q96HI0 755 aaPredicted RBP13.54□□□□□ -0.24
VRK3-206ENST00000594090 METTL2AQ96IZ6 378 aaKnown RBP13.54□□□□□ -0.24
VRK3-206ENST00000594090 CNPPD1Q9BV87 410 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 ANKRD10Q9NXR5 420 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 MAP10Q9P2G4 905 aa13.54□□□□□ -0.24
VRK3-206ENST00000594090 TMEM120BA0PK00 339 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 TMEM200CA6NKL6 621 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 RGS14O43566 566 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 PRAMEF2O60811 474 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 ITGA10O75578 1167 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 SERPINE1P05121 402 aa13.53□□□□□ -0.24
VRK3-206ENST00000594090 ANXA4P09525 319 aaPredicted RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms