RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PCDHGA10Q9Y5H3 936 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 SHISA7A6NL88 538 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 TNFRSF10CO14798 259 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 ATP5A1P25705 553 aaKnown RBP18.64■□□□□ 0.57
CLIP3-206ENST00000593074 AK4P27144 223 aaPredicted RBP18.64■□□□□ 0.57
CLIP3-206ENST00000593074 NTSP30990 170 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 AKT2P31751 481 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 GGT2P36268 569 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 NFATC3Q12968 1075 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 SLAMF1Q13291 335 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 TP53BP2Q13625 1128 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 SMN1Q16637 294 aaKnown RBP18.64■□□□□ 0.57
CLIP3-206ENST00000593074 TOR1AIP1Q5JTV8 583 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 RAB8BQ92930 207 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 SNX7Q9UNH6 387 aa18.64■□□□□ 0.57
CLIP3-206ENST00000593074 GUCY1B2O75343 617 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 INMTO95050 263 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 GADD45GO95257 159 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 CD6P30203 668 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 NPTX1Q15818 432 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 GPR32P1Q8NGA4 272 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 LCN9Q8WX39 176 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 JPH3Q8WXH2 748 aaPredicted RBP18.63■□□□□ 0.57
CLIP3-206ENST00000593074 DTNBP1Q96EV8 351 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 MSANTD3Q96H12 275 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 NIPSNAP1Q9BPW8 284 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 RASSF1Q9NS23 344 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 BRWD1Q9NSI6 2320 aa18.63■□□□□ 0.57
CLIP3-206ENST00000593074 A0A1W2PR48 441 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 ZNF99A8MXY4 864 aaPredicted RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 PRKRAO75569 313 aaKnown RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 ACVR2AP27037 513 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 MAGEA8P43361 318 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 YPEL5P62699 121 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 TFF2Q03403 129 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 TCEA2Q15560 299 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 TMEM64Q6YI46 380 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 ZNF540Q8NDQ6 660 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 SRFBP1Q8NEF9 429 aaKnown RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 OR9Q2Q8NGE9 314 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 UBE2FQ969M7 185 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 SLC35G5Q96KT7 338 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 SIGLEC11Q96RL6 698 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 RHNO1Q9BSD3 238 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 FUNDC2Q9BWH2 189 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 RSPO3Q9BXY4 272 aaPredicted RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 ZNF624Q9P2J8 865 aaPredicted RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 P2RX2Q9UBL9 471 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 NDRG2Q9UN36 371 aaKnown RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 RNF6Q9Y252 685 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 ATG4BQ9Y4P1 393 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 A0A1B0GVG6 124 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 ISM1B1AKI9 464 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 PCDH17O14917 1159 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 SH3BP5O60239 455 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 FAM20BO75063 409 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 NDUFS2O75306 463 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 SEMA4FO95754 770 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 NCBP2P52298 156 aaKnown RBP eCLIP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 CSNK2BP67870 215 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 HPCAP84074 193 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 DCTN2Q13561 401 aaKnown RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 GANABQ14697 944 aaKnown RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 Q6ZPB1 254 aaPredicted RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 SLC16A12Q6ZSM3 486 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 PAQR7Q86WK9 346 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 SLC44A2Q8IWA5 706 aaPredicted RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 PARP8Q8N3A8 854 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 FLCNQ8NFG4 579 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 OR4E2Q8NGC2 313 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 PHF10Q8WUB8 498 aaKnown RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 IPCEF1Q8WWN9 437 aaPredicted RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 CSF3RQ99062 836 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 TWSG1Q9GZX9 223 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 APOBEC3BQ9UH17 382 aaKnown RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 ENPP5Q9UJA9 477 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 PNMA8BQ9ULN7 279 aaPredicted RBP18.62■□□□□ 0.57
CLIP3-206ENST00000593074 KLHL20Q9Y2M5 609 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 HCN4Q9Y3Q4 1203 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 HS3ST3A1Q9Y663 406 aa18.62■□□□□ 0.57
CLIP3-206ENST00000593074 SPTBN5Q9NRC6 3674 aaKnown RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 MYO10Q9HD67 2058 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 A6NCN8 305 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 WASHC1A8K0Z3 465 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 MBTPS2O43462 519 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 CCNB2O95067 398 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 RASGRP1O95267 797 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 AIFM1O95831 613 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 FUT4P22083 530 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 CBLP22681 906 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 GPC1P35052 558 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 ACTR1BP42025 376 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 MAPK10P53779 464 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 LIM2P55344 173 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 SRP54P61011 504 aaKnown RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 ACTR1AP61163 376 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 SMAD4Q13485 552 aaKnown RBP18.61■□□□□ 0.57
CLIP3-206ENST00000593074 CCL4L1Q8NHW4 92 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 SUN3Q8TAQ9 357 aa18.61■□□□□ 0.57
CLIP3-206ENST00000593074 SFXN5Q8TD22 340 aa18.61■□□□□ 0.57
Retrieved 100 of 20,778 RNA–protein pairs in 40.9 ms