RNA–Protein interactions for RNA: ENST00000580642.2

SS18-215, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 4

Gene SS18, Length 545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-215ENST00000580642 NIPSNAP3AQ9UFN0 247 aaPredicted RBP14.37□□□□□ -0.11
SS18-215ENST00000580642 PCDHB14Q9Y5E9 798 aa14.37□□□□□ -0.11
SS18-215ENST00000580642 PLOD2O00469 737 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 PCDH17O14917 1159 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 PLD2O14939 933 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 NVLO15381 856 aaKnown RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 DNAJB6O75190 326 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 ERAL1O75616 437 aaKnown RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 SOX30O94993 753 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 CPSF4O95639 269 aaKnown RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 C6orf47O95873 294 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 KLK3P07288 261 aaPredicted RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 JMJD7P0C870 316 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 CCL4P13236 92 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 XCR1P46094 333 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 NCBP2P52298 156 aaKnown RBP eCLIP14.36□□□□□ -0.111e-8■■■□□ 16.9
SS18-215ENST00000580642 CORO7P57737 925 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 SIM1P81133 766 aaPredicted RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 FOLH1Q04609 750 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 PRSS53Q2L4Q9 553 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 HES3Q5TGS1 186 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 DHRS13Q6UX07 377 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 OVCH1Q7RTY7 1134 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 SERPINA11Q86U17 422 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 SLCO6A1Q86UG4 719 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 ULK2Q8IYT8 1036 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 ST13P4Q8IZP2 240 aaPredicted RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 CLECL1Q8IZS7 167 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 KIF2BQ8N4N8 673 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 SUN3Q8TAQ9 357 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 ZNF675Q8TD23 568 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 ZFP90Q8TF47 636 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 POP5Q969H6 163 aaKnown RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 TMEM125Q96AQ2 219 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 PEX11GQ96HA9 241 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 CPPED1Q9BRF8 314 aaPredicted RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 GLIPR2Q9H4G4 154 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 IL1RL2Q9HB29 575 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 C3orf14Q9HBI5 128 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 SLAMF7Q9NQ25 335 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 THUMPD1Q9NXG2 353 aaKnown RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 SLC25A37Q9NYZ2 338 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 ADA2Q9NZK5 511 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 NTMQ9P121 344 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 PTGFRNQ9P2B2 879 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 TRPC4Q9UBN4 977 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 CD300AQ9UGN4 299 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 BCAP29Q9UHQ4 241 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 NXT1Q9UKK6 140 aaKnown RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 TMEM184BQ9Y519 407 aaPredicted RBP14.36□□□□□ -0.11
SS18-215ENST00000580642 ADAMTS20P59510 1910 aa14.36□□□□□ -0.11
SS18-215ENST00000580642 A0A087WV62 115 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 GLOD5A6NK44 160 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 MEN1O00255 615 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 CLIC1O00299 241 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 GPX2P18283 190 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 ME2P23368 584 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 OR1D4P47884 311 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 SLC7A2P52569 658 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 PRR5P85299 388 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 OCA2Q04671 838 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 BNIP2Q12982 314 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 FADDQ13158 208 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 SLC13A2Q13183 592 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 MAP7Q14244 749 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 FXNQ16595 210 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 CCDC157Q569K6 752 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 C6orf163Q5TEZ5 329 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 ZNF517Q6ZMY9 492 aaPredicted RBP14.35□□□□□ -0.11
SS18-215ENST00000580642 MSRB3Q8IXL7 192 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 C10orf67Q8IYJ2 551 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 GALNT15Q8N3T1 639 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 PLPP5Q8NEB5 264 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 OR56A1Q8NGH5 318 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 ANKRD9Q96BM1 317 aaPredicted RBP14.35□□□□□ -0.11
SS18-215ENST00000580642 KAT8Q9H7Z6 458 aaKnown RBP14.35□□□□□ -0.11
SS18-215ENST00000580642 WDR54Q9H977 334 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 TPT1P8Q9HAU6 139 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 LANCL2Q9NS86 450 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 SUCOQ9UBS9 1254 aaKnown RBP14.35□□□□□ -0.11
SS18-215ENST00000580642 ERVK-11Q9UQG0 969 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 NEUROG3Q9Y4Z2 214 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 PCDHGA8Q9Y5G5 932 aa14.35□□□□□ -0.11
SS18-215ENST00000580642 FRYLO94915 3013 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 COL27A1Q8IZC6 1860 aaPredicted RBP14.34□□□□□ -0.11
SS18-215ENST00000580642 VSTM2BA6NLU5 285 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 FAM227AF5H4B4 570 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 FGF17O60258 216 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 PRKRAO75569 313 aaKnown RBP14.34□□□□□ -0.11
SS18-215ENST00000580642 CIB2O75838 187 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 TIAF1O95411 115 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 GPC1P35052 558 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 FEN1P39748 380 aaKnown RBP14.34□□□□□ -0.11
SS18-215ENST00000580642 CDKN2CP42773 168 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 ANXA11P50995 505 aaKnown RBP14.34□□□□□ -0.11
SS18-215ENST00000580642 KCNJ2P63252 427 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 MAT1AQ00266 395 aaKnown RBP14.34□□□□□ -0.11
SS18-215ENST00000580642 PLIN5Q00G26 463 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 STX4Q12846 297 aa14.34□□□□□ -0.11
SS18-215ENST00000580642 TRAP1Q12931 704 aaKnown RBP14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms