RNA–Protein interactions for RNA: ENST00000580002.5

SHMT1-207, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,759 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-207ENST00000580002 ADCY4Q8NFM4 1077 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 OR4K14Q8NGD5 310 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 PNPT1Q8TCS8 783 aaKnown RBP23.6■■□□□ 1.37
SHMT1-207ENST00000580002 MCUR1Q96AQ8 359 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 FBXO8Q9NRD0 319 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 SIRT3Q9NTG7 399 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-207ENST00000580002 CLDN16Q9Y5I7 305 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 B3GALT1Q9Y5Z6 326 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 FAM149AA5PLN7 773 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 TCN1P20061 433 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-207ENST00000580002 ARHGAP40Q5TG30 622 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 PGM2L1Q6PCE3 622 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 BNC2Q6ZN30 1099 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-207ENST00000580002 ULK2Q8IYT8 1036 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 TBC1D20Q96BZ9 403 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 MVB12AQ96EY5 273 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 HOPXQ9BPY8 73 aaPredicted RBP23.6■■□□□ 1.37
SHMT1-207ENST00000580002 LANCL2Q9NS86 450 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 SPACA6W5XKT8 324 aa23.6■■□□□ 1.37
SHMT1-207ENST00000580002 PRORSD1PA6NEY8 169 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 NME6O75414 186 aaPredicted RBP23.59■■□□□ 1.37
SHMT1-207ENST00000580002 ERN1O75460 977 aaKnown RBP23.59■■□□□ 1.37
SHMT1-207ENST00000580002 MAOAP21397 527 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 FBLP22087 321 aaKnown RBP23.59■■□□□ 1.37
SHMT1-207ENST00000580002 SOX18P35713 384 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 YOD1Q5VVQ6 348 aaPredicted RBP23.59■■□□□ 1.37
SHMT1-207ENST00000580002 ZNF385CQ66K41 422 aaPredicted RBP23.59■■□□□ 1.37
SHMT1-207ENST00000580002 DGAT2L6Q6ZPD8 337 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 LAPTM4BQ86VI4 370 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 SIMC1Q8NDZ2 872 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 OR5P2Q8WZ92 322 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 PPWD1Q96BP3 646 aaKnown RBP23.59■■□□□ 1.37
SHMT1-207ENST00000580002 TAS2R9Q9NYW1 312 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 CTSFQ9UBX1 484 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 PISDQ9UG56 409 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 SRPK3Q9UPE1 567 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 PCDHB3Q9Y5E6 796 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 SNX8Q9Y5X2 465 aa23.59■■□□□ 1.37
SHMT1-207ENST00000580002 A8MUI8 341 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 FHP07954 510 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 CSNK2A2P19784 350 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-207ENST00000580002 DSG2Q14126 1118 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 CEBPEQ15744 281 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 SHISA6Q6ZSJ9 500 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 SCUBE1Q8IWY4 988 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 OR9A2Q8NGT5 310 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 GOT1L1Q8NHS2 421 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-207ENST00000580002 CPPED1Q9BRF8 314 aaPredicted RBP23.58■■□□□ 1.37
SHMT1-207ENST00000580002 STRADBQ9C0K7 418 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 SPAG4Q9NPE6 437 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 CDC14AQ9UNH5 594 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 MAP4K5Q9Y4K4 846 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 ZNF780BQ9Y6R6 833 aa23.58■■□□□ 1.37
SHMT1-207ENST00000580002 NVLO15381 856 aaKnown RBP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 GPR75O95800 540 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 PPP2R1BP30154 601 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 RORAP35398 523 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 SKP1P63208 163 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 LARP7Q4G0J3 582 aaKnown RBP eCLIP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 PIGGQ5H8A4 983 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 NIPAL1Q6NVV3 410 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 PRMT9Q6P2P2 845 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 FAM199XQ6PEV8 388 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 KAT2AQ92830 837 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 ZBED6CLQ96FA7 236 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 MAGED4Q96JG8 741 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 NECTIN3Q9NQS3 549 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 ABCD2Q9UBJ2 740 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 CD300AQ9UGN4 299 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 SLC7A8Q9UHI5 535 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 PSME2Q9UL46 239 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 ENTPD4Q9Y227 616 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 B4E171 279 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 GFRA3O60609 400 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 BMP10O95393 424 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 NPPAP01160 153 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 CPMP14384 443 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 TSPAN7P41732 249 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 SLC13A2Q13183 592 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 ZC3H7AQ8IWR0 971 aaKnown RBP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 TANKQ92844 425 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 CCDC124Q96CT7 223 aaKnown RBP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 LIN37Q96GY3 246 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 PHF12Q96QT6 1004 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 THUMPD3Q9BV44 507 aaKnown RBP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 PRTFDC1Q9NRG1 225 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 ACSS1Q9NUB1 689 aaPredicted RBP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 GPATCH2Q9NW75 528 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 NDE1Q9NXR1 346 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 PCDHGB4Q9UN71 923 aa23.57■■□□□ 1.36
SHMT1-207ENST00000580002 RRP15Q9Y3B9 282 aaKnown RBP23.57■■□□□ 1.36
SHMT1-207ENST00000580002 CSRP1P21291 193 aaKnown RBP23.56■■□□□ 1.36
SHMT1-207ENST00000580002 NTSP30990 170 aa23.56■■□□□ 1.36
SHMT1-207ENST00000580002 SOAT1P35610 550 aa23.56■■□□□ 1.36
SHMT1-207ENST00000580002 ERFP50548 548 aa23.56■■□□□ 1.36
SHMT1-207ENST00000580002 MRPS35P82673 323 aaKnown RBP23.56■■□□□ 1.36
SHMT1-207ENST00000580002 TARDBPQ13148 414 aaKnown RBP eCLIP23.56■■□□□ 1.36
SHMT1-207ENST00000580002 NKAIN1Q4KMZ8 207 aa23.56■■□□□ 1.36
SHMT1-207ENST00000580002 FBXW8Q8N3Y1 598 aa23.56■■□□□ 1.36
SHMT1-207ENST00000580002 AMER2Q8N7J2 671 aa23.56■■□□□ 1.36
Retrieved 100 of 20,778 RNA–protein pairs in 54.3 ms