RNA–Protein interactions for RNA: ENST00000574867.5

NUP88-210, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 2,081 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-210ENST00000574867 THAP4Q8WY91 577 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 EXOSC8Q96B26 276 aaKnown RBP16.01■□□□□ 0.15
NUP88-210ENST00000574867 ADAP2Q9NPF8 381 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 SLC35C2Q9NQQ7 365 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 MRGBPQ9NV56 204 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 ATAD3AQ9NVI7 634 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 CDC14CA4D256 554 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 PEX12O00623 359 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 SLC35E2P0CK97 266 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 CSNK2A2P19784 350 aaPredicted RBP16.01■□□□□ 0.15
NUP88-210ENST00000574867 STT3AP46977 705 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 ATP4BP51164 291 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 TMPRSS3P57727 454 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 ID2Q02363 134 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 TERF2Q15554 542 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 OR4N5Q8IXE1 308 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 ST13P4Q8IZP2 240 aaPredicted RBP16.01■□□□□ 0.15
NUP88-210ENST00000574867 MIER2Q8N344 545 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 MARK4Q96L34 752 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 CATSPER2Q96P56 530 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 DGAT2Q96PD7 388 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 ZIM2Q9NZV7 527 aa16.01■□□□□ 0.15
NUP88-210ENST00000574867 URB1O60287 2271 aaKnown RBP16.01■□□□□ 0.15
NUP88-210ENST00000574867 CPMP14384 443 aa16■□□□□ 0.15
NUP88-210ENST00000574867 COX7A2P14406 83 aa16■□□□□ 0.15
NUP88-210ENST00000574867 NTSP30990 170 aa16■□□□□ 0.15
NUP88-210ENST00000574867 XKP51811 444 aa16■□□□□ 0.15
NUP88-210ENST00000574867 ELAVL1Q15717 326 aaKnown RBP16■□□□□ 0.15
NUP88-210ENST00000574867 CEBPEQ15744 281 aa16■□□□□ 0.15
NUP88-210ENST00000574867 SFT2D3Q587I9 215 aa16■□□□□ 0.15
NUP88-210ENST00000574867 KIRREL2Q6UWL6 708 aa16■□□□□ 0.15
NUP88-210ENST00000574867 CAMKMTQ7Z624 323 aa16■□□□□ 0.15
NUP88-210ENST00000574867 LRRC25Q8N386 305 aaPredicted RBP16■□□□□ 0.15
NUP88-210ENST00000574867 KRTCAP2Q8N6L1 136 aa16■□□□□ 0.15
NUP88-210ENST00000574867 NATD1Q8N6N6 113 aa16■□□□□ 0.15
NUP88-210ENST00000574867 GLB1L3Q8NCI6 653 aaPredicted RBP16■□□□□ 0.15
NUP88-210ENST00000574867 OR11G2Q8NGC1 345 aa16■□□□□ 0.15
NUP88-210ENST00000574867 TESCQ96BS2 214 aa16■□□□□ 0.15
NUP88-210ENST00000574867 C8orf44Q96CB5 159 aa16■□□□□ 0.15
NUP88-210ENST00000574867 ZBTB18Q99592 522 aa16■□□□□ 0.15
NUP88-210ENST00000574867 ELAC2Q9BQ52 826 aaKnown RBP16■□□□□ 0.15
NUP88-210ENST00000574867 ZNF700Q9H0M5 742 aa16■□□□□ 0.15
NUP88-210ENST00000574867 P4HTMQ9NXG6 502 aa16■□□□□ 0.15
NUP88-210ENST00000574867 WASHC1A8K0Z3 465 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 OR10H2O60403 315 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 SNX3O60493 162 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 IFNA16P05015 189 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 COX6A1P12074 109 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 PORP16435 677 aaPredicted RBP15.99■□□□□ 0.15
NUP88-210ENST00000574867 GALNSP34059 522 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 CPZQ66K79 652 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 CNRIP1Q96F85 164 aaPredicted RBP15.99■□□□□ 0.15
NUP88-210ENST00000574867 RBM18Q96H35 190 aaKnown RBP15.99■□□□□ 0.15
NUP88-210ENST00000574867 ZNF681Q96N22 645 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 LPAR4Q99677 370 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 CLMPQ9H6B4 373 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 TMEM45AQ9NWC5 275 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 SH3BP4Q9P0V3 963 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 G3BP2Q9UN86 482 aaKnown RBP15.99■□□□□ 0.15
NUP88-210ENST00000574867 POLHQ9Y253 713 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 IGHV1-45A0A0A0MS14 117 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 GABRR3A8MPY1 467 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 NKX2-8O15522 239 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 PDPK1O15530 556 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 ATP1B1P05026 303 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 PRKAR1AP10644 381 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 EEF1A2Q05639 463 aaKnown RBP15.99■□□□□ 0.15
NUP88-210ENST00000574867 SF3A3Q12874 501 aaKnown RBP eCLIP15.99■□□□□ 0.15
NUP88-210ENST00000574867 ATP1A4Q13733 1029 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 SQLEQ14534 574 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 CPTPQ5TA50 214 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 TUBB6Q9BUF5 446 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 RABEP2Q9H5N1 569 aa15.99■□□□□ 0.15
NUP88-210ENST00000574867 PNO1Q9NRX1 252 aaKnown RBP15.99■□□□□ 0.15
NUP88-210ENST00000574867 COPG1Q9Y678 874 aaKnown RBP15.99■□□□□ 0.15
NUP88-210ENST00000574867 SAGE2PA6NJ88 616 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 K7ENP7 123 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 DYRK3O43781 588 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 SLC22A3O75751 556 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 HPP00738 406 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 NCF2P19878 526 aaPredicted RBP15.98■□□□□ 0.15
NUP88-210ENST00000574867 MPIP34949 423 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 UFM1P61960 85 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 SRSF11Q05519 484 aaKnown RBP15.98■□□□□ 0.15
NUP88-210ENST00000574867 PCOLCEQ15113 449 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 ANKRD26P1Q6NSI1 321 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 INO80CQ6PI98 192 aaPredicted RBP15.98■□□□□ 0.15
NUP88-210ENST00000574867 PAPD4Q6PIY7 484 aaKnown RBP15.98■□□□□ 0.15
NUP88-210ENST00000574867 NDUFAF7Q7L592 441 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 OR7A2PQ8NGA2 310 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 OR14A16Q8NHC5 309 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 DAZLQ92904 295 aaKnown RBP15.98■□□□□ 0.15
NUP88-210ENST00000574867 COQ8BQ96D53 544 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 BBS4Q96RK4 519 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 BHLHE41Q9C0J9 482 aaPredicted RBP15.98■□□□□ 0.15
NUP88-210ENST00000574867 FBXL4Q9UKA2 621 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 NSG1A0A0A6YYJ2 146 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 MYO1GB0I1T2 1018 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 FAM107AO95990 144 aa15.98■□□□□ 0.15
NUP88-210ENST00000574867 ITPKBP27987 946 aa15.98■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms