RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 WDR77Q9BQA1 342 aaPredicted RBP12.6□□□□□ -0.39
CLK3-218ENST00000566926 MESP1Q9BRJ9 268 aa12.6□□□□□ -0.39
CLK3-218ENST00000566926 MFRPQ9BY79 579 aa12.6□□□□□ -0.39
CLK3-218ENST00000566926 TRIM4Q9C037 500 aa12.6□□□□□ -0.39
CLK3-218ENST00000566926 AICDAQ9GZX7 198 aa12.6□□□□□ -0.39
CLK3-218ENST00000566926 ASIC5Q9NY37 505 aa12.6□□□□□ -0.39
CLK3-218ENST00000566926 SHANK1Q9Y566 2161 aa12.6□□□□□ -0.39
CLK3-218ENST00000566926 A0A0G2JN53 185 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 DYTNA2CJ06 578 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 BLACEA4D250 179 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 CAPN14A8MX76 684 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 C4orf51C9J302 202 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 LSM1O15116 133 aaKnown RBP12.59□□□□□ -0.39
CLK3-218ENST00000566926 SEC24DO94855 1032 aaPredicted RBP12.59□□□□□ -0.39
CLK3-218ENST00000566926 SORBS2O94875 1100 aaKnown RBP12.59□□□□□ -0.39
CLK3-218ENST00000566926 TGFB1P01137 390 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 CALB2P22676 271 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 PTX3P26022 381 aaPredicted RBP12.59□□□□□ -0.39
CLK3-218ENST00000566926 EFNA3P52797 238 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 HSD17B7P56937 341 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 KCNC4Q03721 635 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 EMX2Q04743 252 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 BNIP1Q12981 228 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 RUNX2Q13950 521 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 NR6A1Q15406 480 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 DEPDC1Q5TB30 811 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 KHDRBS2Q5VWX1 349 aaKnown RBP12.59□□□□□ -0.39
CLK3-218ENST00000566926 PAPD4Q6PIY7 484 aaKnown RBP12.59□□□□□ -0.39
CLK3-218ENST00000566926 Q6ZS92 163 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 ATCAYQ86WG3 371 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 ZNF595Q8IYB9 648 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 WDR20Q8TBZ3 569 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 BRIX1Q8TDN6 353 aaKnown RBP12.59□□□□□ -0.39
CLK3-218ENST00000566926 RGMAQ96B86 450 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 PPP1R36Q96LQ0 422 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 C3orf30Q96M34 536 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 CCDC106Q9BWC9 280 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 LYRM4Q9HD34 91 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 PRDM7Q9NQW5 492 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 C1orf109Q9NX04 203 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 NOP53Q9NZM5 478 aaKnown RBP12.59□□□□□ -0.39
CLK3-218ENST00000566926 PTGFRNQ9P2B2 879 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 EIF3LQ9Y262 564 aaKnown RBP12.59□□□□□ -0.39
CLK3-218ENST00000566926 CROCCQ5TZA2 2017 aa12.59□□□□□ -0.39
CLK3-218ENST00000566926 SVILO95425 2214 aa12.58□□□□□ -0.39
CLK3-218ENST00000566926 IGHV3-20A0A0C4DH32 117 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 ATP6AP2A0A1C7CYW4 349 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 OR2W5A6NFC9 320 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 DNAJB6O75190 326 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 ATP6AP2O75787 350 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 UBOX5O94941 541 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 UNC5CO95185 931 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 TBX6O95947 436 aaPredicted RBP12.58□□□□□ -0.4
CLK3-218ENST00000566926 PDYNP01213 254 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 SOX11P35716 441 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 SSR2P43308 183 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 RAP1GDS1P52306 607 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 MLLT10P55197 1068 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 LIM2P55344 173 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 TAS2R50P59544 299 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 FOXK1P85037 733 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 DDX39BQ13838 428 aaKnown RBP12.58□□□□□ -0.4
CLK3-218ENST00000566926 RPS6KA2Q15349 733 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 TLR1Q15399 786 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 PLEKHN1Q494U1 663 aaPredicted RBP12.58□□□□□ -0.4
CLK3-218ENST00000566926 COLEC12Q5KU26 742 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 TCHHL1Q5QJ38 904 aaPredicted RBP12.58□□□□□ -0.4
CLK3-218ENST00000566926 C6orf136Q5SQH8 315 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 ABHD17BQ5VST6 288 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 ADNP2Q6IQ32 1131 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 LINC00696Q6ZRV3 163 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 Q6ZSR9 355 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 MIER2Q8N344 545 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 FNDC5Q8NAU1 212 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 HUS1BQ8NHY5 278 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 DNAJB14Q8TBM8 379 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 CPT1CQ8TCG5 803 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 TSLPQ969D9 159 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 ZNF354BQ96LW1 612 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 SERPINI1Q99574 410 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 ZNF385DQ9H6B1 395 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 LRTM1Q9HBL6 345 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 MMP25Q9NPA2 562 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 PRTFDC1Q9NRG1 225 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 SDR39U1Q9NRG7 319 aaPredicted RBP12.58□□□□□ -0.4
CLK3-218ENST00000566926 MS4A12Q9NXJ0 267 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 ABI3Q9P2A4 366 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 VPS29Q9UBQ0 182 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 DAPP1Q9UN19 280 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 MAPRE3Q9UPY8 281 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 CCL27Q9Y4X3 112 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 MYO18BQ8IUG5 2567 aa12.58□□□□□ -0.4
CLK3-218ENST00000566926 PRRC2CQ9Y520 2896 aaKnown RBP12.57□□□□□ -0.4
CLK3-218ENST00000566926 TCRBV16S1A1N1A0A5B0 115 aa12.57□□□□□ -0.4
CLK3-218ENST00000566926 FAM227AF5H4B4 570 aa12.57□□□□□ -0.4
CLK3-218ENST00000566926 CDK2AP1O14519 115 aa12.57□□□□□ -0.4
CLK3-218ENST00000566926 MYO1DO94832 1006 aa12.57□□□□□ -0.4
CLK3-218ENST00000566926 SEMA3DO95025 777 aa12.57□□□□□ -0.4
CLK3-218ENST00000566926 ITGAMP11215 1152 aa12.57□□□□□ -0.4
CLK3-218ENST00000566926 HIST1H1TP22492 207 aaPredicted RBP12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 40 ms