RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 PAQR8Q8TEZ7 354 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 PPWD1Q96BP3 646 aaKnown RBP15.8■□□□□ 0.12
CLN3-216ENST00000565316 NXNL1Q96CM4 212 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 RBM18Q96H35 190 aaKnown RBP15.8■□□□□ 0.12
CLN3-216ENST00000565316 ART5Q96L15 291 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 TTYH2Q9BSA4 534 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 ZNF717Q9BY31 904 aaPredicted RBP15.8■□□□□ 0.12
CLN3-216ENST00000565316 SEMA4BQ9NPR2 832 aaPredicted RBP15.8■□□□□ 0.12
CLN3-216ENST00000565316 PHF11Q9UIL8 331 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 ACOT9Q9Y305 439 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 UTP11Q9Y3A2 253 aaKnown RBP15.8■□□□□ 0.12
CLN3-216ENST00000565316 INTS1Q8N201 2190 aaKnown RBP15.8■□□□□ 0.12
CLN3-216ENST00000565316 HCFC1P51610 2035 aa15.8■□□□□ 0.12
CLN3-216ENST00000565316 FIGNL2A6NMB9 653 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 SYCE1LA8MT33 242 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 H0YIV9 168 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 PROM1O43490 865 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 DYRK3O43781 588 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 HCN1O60741 890 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 HOXD4P09016 255 aaPredicted RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 CELA3AP09093 270 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 GLI4P10075 376 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 ALOX15P16050 662 aaPredicted RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 PTX3P26022 381 aaPredicted RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 RAP1GDS1P52306 607 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 HNRNPH2P55795 449 aaKnown RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 RIPPLY3P57055 190 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 PLIN5Q00G26 463 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 C2orf54Q08AI8 447 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 TBL3Q12788 808 aaKnown RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 SETDB1Q15047 1291 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 TRADDQ15628 312 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 LIPJQ5W064 366 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 SLC22A10Q63ZE4 541 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 C18orf63Q68DL7 685 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 MRM1Q6IN84 353 aaKnown RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 DND1Q8IYX4 353 aaKnown RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 ST13P4Q8IZP2 240 aaPredicted RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 SLC22A8Q8TCC7 542 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 SPACA9Q96E40 222 aaPredicted RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 MTERF1Q99551 399 aaKnown RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 CENPKQ9BS16 269 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 SDAD1Q9NVU7 687 aaKnown RBP eCLIP15.79■□□□□ 0.12
CLN3-216ENST00000565316 PSD3Q9NYI0 1048 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 TNFRSF10DQ9UBN6 386 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 ASB4Q9Y574 426 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 PCDHGA11Q9Y5H2 935 aa15.79■□□□□ 0.12
CLN3-216ENST00000565316 SEC23IPQ9Y6Y8 1000 aaKnown RBP15.79■□□□□ 0.12
CLN3-216ENST00000565316 ZFHX3Q15911 3703 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 A0A087X1B8 175 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 ATP6AP2A0A1C7CYW4 349 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 HMX2A2RU54 273 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 KLK8O60259 260 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 UGDHO60701 494 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 WDR1O75083 606 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 ATP6AP2O75787 350 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 GPR75O95800 540 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 FBXO45P0C2W1 286 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 TLX1P31314 330 aaPredicted RBP15.78■□□□□ 0.12
CLN3-216ENST00000565316 GALNSP34059 522 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 BSGP35613 385 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 PIGAP37287 484 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 MAN2A2P49641 1150 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 DDX39BQ13838 428 aaKnown RBP15.78■□□□□ 0.12
CLN3-216ENST00000565316 FAM83EQ2M2I3 478 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 SPRED3Q2MJR0 410 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 ZNF585AQ6P3V2 769 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 B3GNT6Q6ZMB0 384 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 CCDC25Q86WR0 208 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 FBXW8Q8N3Y1 598 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 KCTD4Q8WVF5 259 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 PELOQ9BRX2 385 aaKnown RBP15.78■□□□□ 0.12
CLN3-216ENST00000565316 RAB17Q9H0T7 212 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 DDX31Q9H8H2 851 aaKnown RBP15.78■□□□□ 0.12
CLN3-216ENST00000565316 PROK2Q9HC23 129 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 LYARQ9NX58 379 aaKnown RBP15.78■□□□□ 0.12
CLN3-216ENST00000565316 KCNN3Q9UGI6 736 aa15.78■□□□□ 0.12
CLN3-216ENST00000565316 A0A0A6YYD5 115 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 A0A1W2PR48 441 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 EEDO75530 441 aaKnown RBP15.77■□□□□ 0.12
CLN3-216ENST00000565316 PRKRAO75569 313 aaKnown RBP15.77■□□□□ 0.12
CLN3-216ENST00000565316 C2P06681 752 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 BUD31P41223 144 aaPredicted RBP15.77■□□□□ 0.12
CLN3-216ENST00000565316 ALDH18A1P54886 795 aaKnown RBP15.77■□□□□ 0.12
CLN3-216ENST00000565316 RPS13P62277 151 aaKnown RBP15.77■□□□□ 0.12
CLN3-216ENST00000565316 IRF9Q00978 393 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 CUL3Q13618 768 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 ACAP2Q15057 778 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 PCBP2Q15366 365 aaKnown RBP eCLIP15.77■□□□□ 0.12
CLN3-216ENST00000565316 PFKFB4Q16877 469 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 METTL2BQ6P1Q9 378 aaKnown RBP15.77■□□□□ 0.12
CLN3-216ENST00000565316 L3MBTL4Q8NA19 623 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 SARAFQ96BY9 339 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 REPS1Q96D71 796 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 GPR78Q96P69 363 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 WWTR1Q9GZV5 400 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 ZNF703Q9H7S9 590 aaPredicted RBP15.77■□□□□ 0.12
CLN3-216ENST00000565316 ACTR8Q9H981 624 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 SLC24A3Q9HC58 644 aa15.77■□□□□ 0.12
CLN3-216ENST00000565316 PRM3Q9NNZ6 103 aa15.77■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.1 ms