RNA–Protein interactions for RNA: ENST00000563984.1

VPS35-205, Transcript of VPS35, retromer complex component, humanhuman

TSL 2

Gene VPS35, Length 775 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-205ENST00000563984 LINC01465Q8N7H1 131 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 POC5Q8NA72 575 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 ACBD4Q8NC06 268 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CCNYQ8ND76 341 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 OR5T2Q8NGG2 359 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 GRHL3Q8TE85 626 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PHYHIPQ92561 330 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 STMN2Q93045 179 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 TMCO6Q96DC7 493 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 DGCR14Q96DF8 476 aaKnown RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 MRPL48Q96GC5 212 aaKnown RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 SNX22Q96L94 193 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 TGS1Q96RS0 853 aaKnown RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 PCYT2Q99447 389 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 KRT12Q99456 494 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 MGME1Q9BQP7 344 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 REEP2Q9BRK0 252 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PRRG3Q9BZD7 231 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 OSBPL8Q9BZF1 889 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 OR2B2Q9GZK3 357 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PRSS22Q9GZN4 317 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CCDC90BQ9GZT6 254 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PCDHB16Q9NRJ7 776 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 GJB4Q9NTQ9 266 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PANK4Q9NVE7 773 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 FAM118AQ9NWS6 357 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 MRPL22Q9NWU5 206 aaKnown RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 MS4A12Q9NXJ0 267 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CD274Q9NZQ7 290 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 PLEKHA6Q9Y2H5 1048 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 RBMX2Q9Y388 322 aaKnown RBP4.83□□□□□ -1.64
VPS35-205ENST00000563984 GRIP1Q9Y3R0 1128 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CASZ1Q86V15 1759 aa4.83□□□□□ -1.64
VPS35-205ENST00000563984 CAMSAP2Q08AD1 1489 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 PTCH1Q13635 1447 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 FHOD3Q2V2M9 1422 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 NID2Q14112 1375 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 KIAA0232Q92628 1395 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 FAM234BA2RU67 622 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 MGAT4DA6NG13 374 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 METTL15A6NJ78 407 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 CD8B2A6NJW9 211 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 RFPL4AA6NLU0 287 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 NPIPA7E9PJI5 369 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 RFPL4AL1F8VTS6 287 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 TLX3O43711 291 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 HS6ST1O60243 411 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 DPM1O60762 260 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 CTNSO60931 367 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 LRCH4O75427 683 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 MED6O75586 246 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 BCAR3O75815 825 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 NXPH2O95156 264 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 LDOC1O95751 146 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 DDAH2O95865 285 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 GPIP06744 558 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 ANXA2P07355 339 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 FBP1P09467 338 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 NPIPA8P0DM63 369 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 SLC2A1P11166 492 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 RPA2P15927 270 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 MYF6P23409 242 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 EEF1B2P24534 225 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 LAP3P28838 519 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 ARL1P40616 181 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 OR3A3P47888 321 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 NRIP1P48552 1158 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 JAK3P52333 1124 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 HTRA4P83105 476 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 IL9RQ01113 521 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 MTAPQ13126 283 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 ALKBH1Q13686 389 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 ST3GAL2Q16842 350 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 CRY2Q49AN0 593 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 ARMCX4Q5H9R4 360 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 UBAP2Q5T6F2 1119 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 IRAK1BP1Q5VVH5 260 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 WSCD1Q658N2 575 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 LRRC66Q68CR7 880 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 WBP2NLQ6ICG8 309 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 RPL13AP3Q6NVV1 102 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 RWDD4Q6NW29 188 aaKnown RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 DHRS4L2Q6PKH6 230 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 SLC39A5Q6ZMH5 540 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 RNF44Q7L0R7 432 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 TMEM17Q86X19 198 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 DHFR2Q86XF0 187 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 VRK2Q86Y07 508 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 GCNT2Q8N0V5 402 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 C17orf78Q8N4C9 275 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 IL17RCQ8NAC3 791 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 SYT14Q8NB59 555 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 CATSPER1Q8NEC5 780 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 RDM1Q8NG50 284 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 OR10T2Q8NGX3 314 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 OR6X1Q8NH79 312 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 C9orf43Q8TAL5 461 aaPredicted RBP4.82□□□□□ -1.64
VPS35-205ENST00000563984 ZNF398Q8TD17 642 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 DUSP19Q8WTR2 217 aa4.82□□□□□ -1.64
VPS35-205ENST00000563984 SELENOMQ8WWX9 145 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms