RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 BTN2A2Q8WVV5 523 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 OTUB1Q96FW1 271 aaPredicted RBP12.56□□□□□ -0.4
CLN3-210ENST00000563874 TMEM169Q96HH4 297 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 MND1Q9BWT6 205 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 MIXL1Q9H2W2 232 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 MVB12BQ9H7P6 319 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 DYRK1BQ9Y463 629 aa12.56□□□□□ -0.4
CLN3-210ENST00000563874 CKAP5Q14008 2032 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 HYKKA2RU49 373 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 FABP12A6NFH5 140 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 PRKYO43930 277 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 ADAP00813 363 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 MYCP01106 439 aaPredicted RBP12.55□□□□□ -0.4
CLN3-210ENST00000563874 PIPP12273 146 aaPredicted RBP12.55□□□□□ -0.4
CLN3-210ENST00000563874 VIPR1P32241 457 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 DDOSTP39656 456 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 RECQLP46063 649 aaPredicted RBP12.55□□□□□ -0.4
CLN3-210ENST00000563874 Q5BKY6 102 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 MPP7Q5T2T1 576 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 NANOGP1Q8N7R0 232 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 REPS1Q96D71 796 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 LMLNQ96KR4 655 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 LINC00597Q9H2U6 94 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 SEMA3GQ9NS98 782 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 TXNL4BQ9NX01 149 aaKnown RBP12.55□□□□□ -0.4
CLN3-210ENST00000563874 NDUFB11Q9NX14 153 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 TOR4AQ9NXH8 423 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 MALT1Q9UDY8 824 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 KCND3Q9UK17 655 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 PLAGL1Q9UM63 463 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 THSD7BQ9C0I4 1608 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 CCDC182A6NF36 153 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 CSF3P09919 207 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 C1GALT1C1LP0DN25 315 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 SDC2P34741 201 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 TLE2Q04725 743 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 KHDRBS1Q07666 443 aaKnown RBP eCLIP12.55□□□□□ -0.4
CLN3-210ENST00000563874 SCN1BQ07699 218 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 ELOAQ14241 798 aaKnown RBP12.55□□□□□ -0.4
CLN3-210ENST00000563874 HEPACAMQ14CZ8 416 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 ATAT1Q5SQI0 421 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 OR2G6Q5TZ20 316 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 ABI3BPQ7Z7G0 1075 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 GLCCI1Q86VQ1 547 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 SLC7A13Q8TCU3 470 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 GLYATL1Q969I3 302 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 MYNNQ9NPC7 610 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 FZD3Q9NPG1 666 aa12.55□□□□□ -0.4
CLN3-210ENST00000563874 TMA7Q9Y2S6 64 aaKnown RBP12.55□□□□□ -0.4
CLN3-210ENST00000563874 SPIN1Q9Y657 262 aaPredicted RBP12.55□□□□□ -0.4
CLN3-210ENST00000563874 GRM6O15303 877 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 MSL3P1P0C860 447 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 XPAP23025 273 aaPredicted RBP12.54□□□□□ -0.4
CLN3-210ENST00000563874 HOXD10P28358 340 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 ETV5P41161 510 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 GSTM5P46439 218 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 DGKGP49619 791 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 ETV1P50549 477 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 SNRPGP62308 76 aaKnown RBP12.54□□□□□ -0.4
CLN3-210ENST00000563874 ILKQ13418 452 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 C1DQ13901 141 aaKnown RBP12.54□□□□□ -0.4
CLN3-210ENST00000563874 GRIN2CQ14957 1233 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 FLYWCH1Q4VC44 716 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 PYDC2Q56P42 97 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 PDZK1Q5T2W1 519 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 PAMR1Q6UXH9 720 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 TRIM69Q86WT6 500 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 CPXM2Q8N436 756 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 TRAM1L1Q8N609 369 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 APOBEC4Q8WW27 367 aaKnown RBP12.54□□□□□ -0.4
CLN3-210ENST00000563874 AP2M1Q96CW1 435 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 NECTIN4Q96NY8 510 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 NELL2Q99435 816 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 RPL36Q9Y3U8 105 aaKnown RBP12.54□□□□□ -0.4
CLN3-210ENST00000563874 A0A0B4J293 547 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 PQBP1O60828 265 aaKnown RBP12.54□□□□□ -0.4
CLN3-210ENST00000563874 H1F0P07305 194 aaKnown RBP12.54□□□□□ -0.4
CLN3-210ENST00000563874 TSPAN19P0C672 248 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 PTGER1P34995 402 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 HIST2H2AA3Q6FI13 130 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 PGBD2Q6P3X8 592 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 BRAT1Q6PJG6 821 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 TRMT11Q7Z4G4 463 aaKnown RBP12.54□□□□□ -0.4
CLN3-210ENST00000563874 TRAPPC5Q8IUR0 188 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 ZFP41Q8N8Y5 198 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 SLC25A46Q96AG3 418 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 RNF31Q96EP0 1072 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 TM9SF2Q99805 663 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 ZSCAN5AQ9BUG6 496 aa12.54□□□□□ -0.4
CLN3-210ENST00000563874 HMX3A6NHT5 357 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 CYP2A6P11509 494 aaPredicted RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 TIMP2P16035 220 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 ZNF30P17039 623 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 PRLHRP49683 370 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 MANFP55145 182 aaKnown RBP12.53□□□□□ -0.4
CLN3-210ENST00000563874 TAP2Q03519 686 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SREBF2Q12772 1141 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 RAB33AQ14088 237 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 NCF4Q15080 339 aa12.53□□□□□ -0.4
CLN3-210ENST00000563874 SPDYE7PQ495Y7 208 aa12.53□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 32.5 ms