RNA–Protein interactions for RNA: ENST00000562258.5

VPS39-205, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 2

Gene VPS39, Length 4,160 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-205ENST00000562258 LOC105369274A0A096LPK9 316 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 NPIPA5A0A0B4J1W7 369 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 LOC102723532A0A0G2JNH3 316 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 PNMA8CA0A1B0GUJ8 204 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 HMX2A2RU54 273 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 A8MVJ9 347 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 NPIPA7E9PJI5 369 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 E2F3O00716 465 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 XKRYO14609 159 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 PPM1DO15297 605 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 GREM1O60565 184 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SOX30O94993 753 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 NPIPA8P0DM63 369 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 BLVRAP53004 296 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 E2F1Q01094 437 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SLC34A1Q06495 639 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 KCNAB2Q13303 367 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 ELOAQ14241 798 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 MANEAQ5SRI9 462 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 C18orf63Q68DL7 685 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 ZFP1Q6P2D0 407 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 PIGWQ7Z7B1 504 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 OR4N4Q8N0Y3 316 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 ASB15Q8WXK1 588 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 L3HYPDHQ96EM0 354 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 PDLIM5Q96HC4 596 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 MAPKAP1Q9BPZ7 522 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 HPF1Q9NWY4 346 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 KLHL42Q9P2K6 505 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 MBD1Q9UIS9 605 aaPredicted RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 ASB1Q9Y576 335 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SCN3AQ9NY46 2000 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 FLRT2O43155 660 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 RRP8O43159 456 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 PRKNO60260 465 aaPredicted RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 HCN1O60741 890 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 FAM20BO75063 409 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SDC1P18827 310 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 ITIH1P19827 911 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SLC5A2P31639 672 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 CLDN6P56747 220 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 DCDP81605 110 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 FOLH1Q04609 750 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 KLC1Q07866 573 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 DGCR6Q14129 220 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 IHHQ14623 411 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 TRIP6Q15654 476 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 NKAIN1Q4KMZ8 207 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 RAET1LQ5VY80 246 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 FCRLBQ6BAA4 426 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 NAGSQ8N159 534 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 UBE2J2Q8N2K1 259 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 VWA5B2Q8N398 1253 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 TEX47Q8TBZ9 253 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 OR5P2Q8WZ92 322 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 C8orf44Q96CB5 159 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 CHID1Q9BWS9 393 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 NRSN2Q9GZP1 204 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SEMA6CQ9H3T2 930 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 EBF2Q9HAK2 575 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 GMPPBQ9Y5P6 360 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 CSO75390 466 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 PSIP1O75475 530 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 EEDO75530 441 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 ZNF821O75541 412 aaPredicted RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 FABP3P05413 133 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 PEPDP12955 493 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 CKMT2P17540 419 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 ADSLP30566 484 aaPredicted RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 RORAP35398 523 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 C10orf62Q5T681 223 aaPredicted RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 ATG9BQ674R7 924 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 ALG1LQ6GMV1 187 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 NANOGP8Q6NSW7 305 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 NIPAL1Q6NVV3 410 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 TMPRSS9Q7Z410 1059 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 ZNF605Q86T29 641 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 TEFMQ96QE5 360 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 SERINC2Q96SA4 455 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 CADM1Q9BY67 442 aaKnown RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 OR51V1Q9H2C8 321 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 NANOGQ9H9S0 305 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SERINC1Q9NRX5 453 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SMOXQ9NWM0 555 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 ZNF624Q9P2J8 865 aaPredicted RBP8.76□□□□□ -1.01
VPS39-205ENST00000562258 DKKL1Q9UK85 242 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SLC17A4Q9Y2C5 497 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 BLOC1S5-TXNDC5H3BN57 136 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 SPINT1O43278 529 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 EMC8O43402 210 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 GADD45GO95257 159 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 P04436 131 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 TARDBPQ13148 414 aaKnown RBP eCLIP8.76□□□□□ -1.01
VPS39-205ENST00000562258 CCNJQ5T5M9 372 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 LPCAT4Q643R3 524 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 TLDC1Q6P9B6 456 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 FAM111BQ6SJ93 734 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 PROSER1Q86XN7 944 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 EPHX4Q8IUS5 362 aa8.76□□□□□ -1.01
VPS39-205ENST00000562258 PARP8Q8N3A8 854 aa8.76□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms