RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 KRT87PA6NCN2 255 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 SHISA7A6NL88 538 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 H0Y8X5 98 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 H0YIG0 161 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 SAP18O00422 153 aaKnown RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 BTN3A3O00478 584 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 SOCS2O14508 198 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ACOX3O15254 700 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 AQP9O43315 295 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 DUX1O43812 170 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 TMPRSS11DO60235 418 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ZBTB11O95625 1053 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 AIFM1O95831 613 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ATP1B1P05026 303 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 CYC1P08574 325 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 SMIM10L1P0DMW3 83 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 NR2F1P10589 423 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 CKMT2P17540 419 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 MAGP20916 626 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 CDH3P22223 829 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 AK4P27144 223 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 PEBP1P30086 187 aaKnown RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 CNR2P34972 360 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 DCTP40126 519 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 AVPR1BP47901 424 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 PXNP49023 591 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 HMGA2P52926 109 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 NXPH1P58417 271 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 BTN3A2P78410 334 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 MLLT1Q03111 559 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 MVKQ03426 396 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 EEF1A2Q05639 463 aaKnown RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 ZP2Q05996 745 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 HSPB3Q12988 150 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 SERTAD2Q14140 314 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ZNHIT3Q15649 155 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 FAM214AQ32MH5 1076 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 INAVAQ3KP66 663 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 GTDC1Q4AE62 458 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 C14orf28Q4W4Y0 310 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ZNF385BQ569K4 471 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 COLEC12Q5KU26 742 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.11□□□□□ -1.27
VPS39-204ENST00000561818 OGFOD3Q6PK18 319 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ENPP6Q6UWR7 440 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 Q6ZS52 159 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 USP53Q70EK8 1073 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 MED25Q71SY5 747 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 C6orf120Q7Z4R8 191 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 TSPYL5Q86VY4 417 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 C17orf82Q86X59 251 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 RNF130Q86XS8 419 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 EPHX4Q8IUS5 362 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ZNF595Q8IYB9 648 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 NAGSQ8N159 534 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 SIX5Q8N196 739 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 CDRT4Q8N9R6 151 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 TTC29Q8NA56 475 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 ST13P5Q8NFI4 369 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 TSPAN14Q8NG11 270 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 SPPL2AQ8TCT8 520 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ADAMTS16Q8TE57 1224 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 UTP15Q8TED0 518 aaKnown RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 CYGBQ8WWM9 190 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 HDAC2Q92769 488 aaKnown RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 ZNF566Q969W8 418 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 EXOSC8Q96B26 276 aaKnown RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 SMIM10Q96HG1 83 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ZNF354BQ96LW1 612 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 MYCBPQ99417 103 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 STACQ99469 402 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 CDX2Q99626 313 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 PIP5K1AQ99755 562 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 BCL7BQ9BQE9 202 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 LRRC61Q9BV99 259 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ACTRT3Q9BYD9 372 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 PIF1Q9H611 641 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 EPS8L2Q9H6S3 715 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 PDE7BQ9NP56 450 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 LHX9Q9NQ69 397 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 DUSP22Q9NRW4 184 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 C14orf105Q9NVL8 296 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 SCN3BQ9NY72 215 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 SCHIP1Q9P0W5 487 aaPredicted RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 SEC14L3Q9UDX4 400 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 CIDEBQ9UHD4 219 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 RAPGEFL1Q9UHV5 662 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 DAPP1Q9UN19 280 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 ZNF232Q9UNY5 417 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 PLCL2Q9UPR0 1127 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 EXO1Q9UQ84 846 aaKnown RBP7.11□□□□□ -1.27
VPS39-204ENST00000561818 CFL2Q9Y281 166 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 TPRKBQ9Y3C4 175 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 MAP4K5Q9Y4K4 846 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 MYO10Q9HD67 2058 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 CROCCQ5TZA2 2017 aa7.11□□□□□ -1.27
VPS39-204ENST00000561818 A0A1B0GTW7 788 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 TRIM64A6NGJ6 449 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 SNTNA6NMZ2 147 aa7.1□□□□□ -1.27
VPS39-204ENST00000561818 WASHC1A8K0Z3 465 aa7.1□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms