RNA–Protein interactions for RNA: ENST00000557933.5

LDLR-205, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene LDLR, Length 2,941 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-205ENST00000557933 SPATA6Q9NWH7 488 aaPredicted RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 CRNNQ9UBG3 495 aaPredicted RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 KLK4Q9Y5K2 254 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 WDR87Q6ZQQ6 2873 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 WDFY3Q8IZQ1 3526 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 A0A1W2PRB8 838 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 C5orf58C9J3I9 102 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SCAMP1O15126 338 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SCO2O43819 266 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 ICMTO60725 284 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 UQCRC1P31930 480 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 LIMK1P53667 647 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SCN1BQ07699 218 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 IL18Q14116 193 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 ACSM5Q6NUN0 579 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 UNC5DQ6UXZ4 953 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 DCAF4L2Q8NA75 395 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SLC7A13Q8TCU3 470 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 DOK4Q8TEW6 326 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 CLP1Q92989 425 aaKnown RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 PLD4Q96BZ4 506 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 REPS1Q96D71 796 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 HHIPQ96QV1 700 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 TBX5Q99593 518 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 B3GAT2Q9NPZ5 323 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SEMA3GQ9NS98 782 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SSR3Q9UNL2 185 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 CCL26Q9Y258 94 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 ZAR1LA6NP61 321 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 EIF3FO00303 357 aaPredicted RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 EOMESO95936 686 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 EIF2S1P05198 315 aaKnown RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 SCG5P05408 212 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 C8GP07360 202 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 OR12D1P0DN82 309 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 EVI2BP34910 448 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SPINT3P49223 89 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 GPR33Q49SQ1 333 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 FAM46DQ8NEK8 389 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 GPR32P1Q8NGA4 272 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 DNAJB8Q8NHS0 232 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SMAP2Q8WU79 429 aaPredicted RBP11.73□□□□□ -0.53
LDLR-205ENST00000557933 ZFPM2Q8WW38 1151 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 XAGE5Q8WWM1 108 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 SCRN2Q96FV2 425 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 TMEM19Q96HH6 336 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 RNF170Q96K19 258 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 FRMD6Q96NE9 622 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 TAPBPLQ9BX59 468 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 TTTY10Q9BZA0 68 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 PLA2G12AQ9BZM1 189 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 ANKHQ9HCJ1 492 aa11.73□□□□□ -0.53
LDLR-205ENST00000557933 CNTRLQ7Z7A1 2325 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 CD8B2A6NJW9 211 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 LALBAP00709 142 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 CXCL10P02778 98 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 CD8BP10966 210 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 SELPP16109 830 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 XPAP23025 273 aaPredicted RBP11.72□□□□□ -0.53
LDLR-205ENST00000557933 GABRR2P28476 465 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ARPC4P59998 168 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 SYPL1Q16563 259 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ASTLQ6HA08 431 aaPredicted RBP11.72□□□□□ -0.53
LDLR-205ENST00000557933 USP45Q70EL2 814 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 LRRTM4Q86VH4 590 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 CFAP206Q8IYR0 622 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ELMOD2Q8IZ81 293 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 SLC38A5Q8WUX1 472 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 KLHL6Q8WZ60 621 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 PHF21AQ96BD5 680 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 TBC1D20Q96BZ9 403 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 TMCC3Q9ULS5 477 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ALG5Q9Y673 324 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ENPP4Q9Y6X5 453 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 PLXNA3P51805 1871 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 SHISA3A0PJX4 238 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 FEZF1A0PJY2 475 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ISM1B1AKI9 464 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 GFYI3L273 518 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 GTPBP1O00178 669 aaKnown RBP11.72□□□□□ -0.53
LDLR-205ENST00000557933 URODP06132 367 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ZNF791Q3KP31 576 aaPredicted RBP11.72□□□□□ -0.53
LDLR-205ENST00000557933 TIMM50Q3ZCQ8 353 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ZNF57Q68EA5 555 aaPredicted RBP11.72□□□□□ -0.53
LDLR-205ENST00000557933 TCTN3Q6NUS6 607 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 PLET1Q6UQ28 207 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 IQCHQ86VS3 1027 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ZNF480Q8WV37 535 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 GEMIN6Q8WXD5 167 aaKnown RBP11.72□□□□□ -0.53
LDLR-205ENST00000557933 VOPP1Q96AW1 172 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 NACC2Q96BF6 587 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 TMEM80Q96HE8 168 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 SNX18Q96RF0 628 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 RAD9AQ99638 391 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 REEP4Q9H6H4 257 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 CNIH4Q9P003 139 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 TRPC4Q9UBN4 977 aa11.72□□□□□ -0.53
LDLR-205ENST00000557933 ZNF282Q9UDV7 671 aaPredicted RBP11.72□□□□□ -0.53
LDLR-205ENST00000557933 PLEKHB1Q9UF11 243 aaPredicted RBP11.72□□□□□ -0.53
LDLR-205ENST00000557933 SCN2AQ99250 2005 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms