RNA–Protein interactions for RNA: ENST00000556825.5

SHMT2-226, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,215 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-226ENST00000556825 TPGS2Q68CL5 300 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 FAHD1Q6P587 224 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 SLC39A4Q6P5W5 647 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 MEIOBQ8N635 442 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 L3HYPDHQ96EM0 354 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ZNF670Q9BS34 389 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 BRINP2Q9C0B6 783 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 SLC25A32Q9H2D1 315 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 TUBB1Q9H4B7 451 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 NSUN3Q9H649 340 aaKnown RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 METTL17Q9H7H0 456 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 DUSP22Q9NRW4 184 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 GPATCH2LQ9NWQ4 482 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 TAS2R3Q9NYW6 316 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 RGPD3A6NKT7 1758 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 RGPD4Q7Z3J3 1758 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 FAM95CA0A1B0GW59 222 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 RFPL4AA6NLU0 287 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 MCRIP1C9JLW8 97 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 RFPL4AL1F8VTS6 287 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ARNTLO00327 626 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ZNF197O14709 1029 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 KRT33AO76009 404 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ARIH2O95376 493 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 LINC00032P0C843 101 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ADRB3P13945 408 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 GJA1P17302 382 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ANXA7P20073 488 aaKnown RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 CRABP1P29762 137 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 CCR7P32248 378 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ZP1P60852 638 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 MEF2AQ02078 507 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 PDZK1IP1Q13113 114 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 CLN3Q13286 438 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 UBXN2BQ14CS0 331 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ST3GAL2Q16842 350 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 QRICH1Q2TAL8 776 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 MAJINQ3KP22 176 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 RAB6CQ53S08 254 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 SAPCD1Q5SSQ6 148 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ZNF678Q5SXM1 525 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 DCUN1D3Q8IWE4 304 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 B3GNT7Q8NFL0 401 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 OR10J5Q8NHC4 309 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ZNF461Q8TAF7 563 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 TFAP2BQ92481 460 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ZC3H10Q96K80 434 aaKnown RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 OCSTAMPQ9BR26 566 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 RAB6CQ9H0N0 254 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 AP5M1Q9H0R1 490 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 OPN3Q9H1Y3 402 aaPredicted RBP13.19□□□□□ -0.3
SHMT2-226ENST00000556825 MINDY3Q9H8M7 445 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 SLC6A20Q9NP91 592 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 RAD18Q9NS91 495 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 C19orf12Q9NSK7 152 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 ZIM2Q9NZV7 527 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 FKBPLQ9UIM3 349 aa13.19□□□□□ -0.3
SHMT2-226ENST00000556825 BTBD17A6NE02 478 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 TMEM200CA6NKL6 621 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 SSNA1O43805 119 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 MED6O75586 246 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 NPR2P20594 1047 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 CYP2F1P24903 491 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 PSMB4P28070 264 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 SDHAP31040 664 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 SELENOPP49908 381 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 DOK7Q18PE1 504 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 UNC50Q53HI1 259 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 FBXO48Q5FWF7 155 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 XKR3Q5GH77 459 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 LIPJQ5W064 366 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 FAM111BQ6SJ93 734 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 ZNF730Q6ZMV8 503 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 PDZD3Q86UT5 571 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 ZFAND4Q86XD8 727 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 MISPQ8IVT2 679 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 DENND6BQ8NEG7 585 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 MISP3Q96FF7 219 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 LGMNQ99538 433 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 HDHD2Q9H0R4 259 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 DPAGT1Q9H3H5 408 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 COMMD3Q9UBI1 195 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 PLEKHM1Q9Y4G2 1056 aa13.18□□□□□ -0.3
SHMT2-226ENST00000556825 TMEM189-UBE2V1I3L0A0 370 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 DHX15O43143 795 aaKnown RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 VTNP04004 478 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 PRR35P0CG20 571 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 PPP3CBP16298 524 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 GPD1P21695 349 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 MST1P26927 711 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 S100A11P31949 105 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 BTCP35070 178 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 SOX3P41225 446 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 PXNP49023 591 aaPredicted RBP13.17□□□□□ -0.3
SHMT2-226ENST00000556825 KRT33BQ14525 404 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 ATP6AP1LQ52LC2 224 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 LIPNQ5VXI9 398 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 UQCC3Q6UW78 93 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 CLEC10AQ8IUN9 316 aa13.17□□□□□ -0.3
SHMT2-226ENST00000556825 MFSD6LQ8IWD5 586 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms