RNA–Protein interactions for RNA: ENST00000556798.1

SHMT2-225, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 525 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-225ENST00000556798 C2orf80Q0P641 193 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 C6orf136Q5SQH8 315 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 KIRREL3Q8IZU9 778 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 TMEM132CQ8N3T6 1108 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 OR4K14Q8NGD5 310 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 PTPMT1Q8WUK0 201 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-225ENST00000556798 GFM2Q969S9 779 aaKnown RBP16.33■□□□□ 0.2
SHMT2-225ENST00000556798 NCLNQ969V3 563 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 EXOSC8Q96B26 276 aaKnown RBP16.33■□□□□ 0.2
SHMT2-225ENST00000556798 WBP1Q96G27 269 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 EGLN2Q96KS0 407 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 TSSK3Q96PN8 268 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 CCT7Q99832 543 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF552Q9H707 407 aaPredicted RBP16.33■□□□□ 0.2
SHMT2-225ENST00000556798 KCNK13Q9HB14 408 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 MMP25Q9NPA2 562 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 SLCO1B3Q9NPD5 702 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 MED4Q9NPJ6 270 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 PTGFRNQ9P2B2 879 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 TUBD1Q9UJT1 453 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 UTS2RQ9UKP6 389 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 G3BP2Q9UN86 482 aaKnown RBP16.33■□□□□ 0.2
SHMT2-225ENST00000556798 CLCA3PQ9Y6N3 262 aa16.33■□□□□ 0.2
SHMT2-225ENST00000556798 OR10H2O60403 315 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 ICAM2P13598 275 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 PTGER1P34995 402 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 FEN1P39748 380 aaKnown RBP16.32■□□□□ 0.2
SHMT2-225ENST00000556798 XKP51811 444 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 DUSP2Q05923 314 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 HEPACAMQ14CZ8 416 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 TERF2Q15554 542 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 LACTB2Q53H82 288 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-225ENST00000556798 VWA5B1Q5TIE3 1220 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 B3GNTL1Q67FW5 361 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-225ENST00000556798 FCRLBQ6BAA4 426 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 FAM71E1Q6IPT2 247 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 CNTRLQ7Z7A1 2325 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 ST13P4Q8IZP2 240 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF321PQ8N8H1 164 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 FNDC5Q8NAU1 212 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 B3GNT7Q8NFL0 401 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 OR14A16Q8NHC5 309 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 PUM2Q8TB72 1066 aaKnown RBP eCLIP16.32■□□□□ 0.2
SHMT2-225ENST00000556798 M1APQ8TC57 530 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 PSMF1Q92530 271 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 OR8D2Q9GZM6 311 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 ZBTB20Q9HC78 741 aaPredicted RBP16.32■□□□□ 0.2
SHMT2-225ENST00000556798 PFDN4Q9NQP4 134 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 BAIAP2L1Q9UHR4 511 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 TMED5Q9Y3A6 229 aa16.32■□□□□ 0.2
SHMT2-225ENST00000556798 TRBV11-1A0A0K0K1C0 115 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 SYNDIG1LA6NDD5 238 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 A8MUI8 341 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 HRKO00198 91 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 LRATO95237 230 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 BCKDHAP12694 445 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 CPMP14384 443 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 COX7A2P14406 83 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 DRD2P14416 443 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 DDCP20711 480 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 GSTM5P46439 218 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 PRSS53Q2L4Q9 553 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 AGAP7PQ5VUJ5 663 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 TCTN3Q6NUS6 607 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 LINC00696Q6ZRV3 163 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 TICAM1Q8IUC6 712 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 CRLF3Q8IUI8 442 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 WDR75Q8IWA0 830 aaKnown RBP16.31■□□□□ 0.2
SHMT2-225ENST00000556798 LIX1Q8N485 282 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 APCDD1LQ8NCL9 501 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 SLC2A12Q8TD20 617 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 ELP5Q8TE02 316 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 CKAP2Q8WWK9 683 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 SLC39A7Q92504 469 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 DAZLQ92904 295 aaKnown RBP16.31■□□□□ 0.2
SHMT2-225ENST00000556798 CNRIP1Q96F85 164 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-225ENST00000556798 RBM18Q96H35 190 aaKnown RBP16.31■□□□□ 0.2
SHMT2-225ENST00000556798 MAGEB18Q96M61 343 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 AGAP4Q96P64 663 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 SMAD5Q99717 465 aaKnown RBP16.31■□□□□ 0.2
SHMT2-225ENST00000556798 SLC25A18Q9H1K4 315 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 AKTIPQ9H8T0 292 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 MEAF6Q9HAF1 191 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 ZNF223Q9UK11 482 aaPredicted RBP16.31■□□□□ 0.2
SHMT2-225ENST00000556798 EXO1Q9UQ84 846 aaKnown RBP16.31■□□□□ 0.2
SHMT2-225ENST00000556798 BSNQ9UPA5 3926 aa16.31■□□□□ 0.2
SHMT2-225ENST00000556798 SDHDO14521 159 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 DYNC1I1O14576 645 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 HDAC3O15379 428 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 AKAP10O43572 662 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 DDAH2O95865 285 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 ALPPP05187 535 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 SLC35E2P0CK97 266 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 MAPK1P28482 360 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 SOX11P35716 441 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 GPR143P51810 404 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 AP2B1P63010 937 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 PTGR1Q14914 329 aa16.3■□□□□ 0.2
SHMT2-225ENST00000556798 SOWAHCQ53LP3 525 aaPredicted RBP16.3■□□□□ 0.2
SHMT2-225ENST00000556798 IL23RQ5VWK5 629 aa16.3■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms