RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	IQANK1	A0A1B0GTG1	560 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	NCF1B	A6NI72	391 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	CLCA1	A8K7I4	914 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	NCF1C	A8MVU1	366 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	KDM4E	B2RXH2	506 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	CES2	O00748	559 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	TRAPPC6A	O75865	159 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	URI1	O94763	535 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	IGKV3-11	P04433	115 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	HEXA	P06865	529 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	FBXO45	P0C2W1	286 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	NCF1	P14598	390 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	CD53	P19397	219 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	CPN2	P22792	545 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	CTSS	P25774	331 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	GDF1	P27539	372 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	SORD	Q00796	357 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	CRYZ	Q08257	329 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	LAPTM5	Q13571	262 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	PCBP2	Q15366	365 aa	Known RBP eCLIP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	PPP1R7	Q15435	360 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	HIST2H2AC	Q16777	129 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	NSUN5P2	Q63ZY6	315 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	HIST2H2AA3	Q6FI13	130 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	ADNP2	Q6IQ32	1131 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	TRMT10B	Q6PF06	316 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	UBE3D	Q7Z6J8	389 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	OR4N5	Q8IXE1	308 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	TCAIM	Q8N3R3	496 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	OR10G3	Q8NGC4	313 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	NUDT8	Q8WV74	236 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	PPWD1	Q96BP3	646 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	PTCD3	Q96EY7	689 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	ART5	Q96L15	291 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	CNOT10	Q9H9A5	744 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	PLAC1	Q9HBJ0	212 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	PRM3	Q9NNZ6	103 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	DNAJC11	Q9NVH1	559 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	SDAD1	Q9NVU7	687 aa	Known RBP eCLIP	11.62	□□□□□ -0.55	6e-6	■■□□□ 12.1
SHMT2-223	ENST00000556689	RNF14	Q9UBS8	474 aa		11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	CNOT11	Q9UKZ1	510 aa	Known RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	CHCHD2	Q9Y6H1	151 aa	Predicted RBP	11.62	□□□□□ -0.55
SHMT2-223	ENST00000556689	ANKRD33B	A6NCL7	494 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	CD8B2	A6NJW9	211 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	PGRMC1	O00264	195 aa	Known RBP	11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	RTCA	O00442	366 aa	Known RBP	11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	DNALI1	O14645	258 aa	Predicted RBP	11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	TAPBP	O15533	448 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	ARHGEF9	O43307	516 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	FGF17	O60258	216 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	PRAMEF4	O60810	478 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	TRIM3	O75382	744 aa	Predicted RBP	11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	ACSL3	O95573	720 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	HIST1H1T	P22492	207 aa	Predicted RBP	11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	OPRM1	P35372	400 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	GGT5	P36269	586 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	RPL21	P46778	160 aa	Known RBP	11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	FNTA	P49354	379 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	AGFG1	P52594	562 aa	Known RBP	11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	IGLV3-21	P80748	117 aa	Predicted RBP	11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	DOC2A	Q14183	400 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZNF460	Q14592	562 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	TGFBI	Q15582	683 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	AP5B1	Q2VPB7	878 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	TMEM35A	Q53FP2	167 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	PAGE2B	Q5JRK9	111 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	TBCEL	Q5QJ74	424 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	HP1BP3	Q5SSJ5	553 aa	Predicted RBP	11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	PRAMEF9	Q5VWM5	478 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	ZNF793	Q6ZN11	406 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	SLC29A4	Q7RTT9	530 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	KRTAP1-3	Q8IUG1	177 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	MNS1	Q8NEH6	495 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	ANKRD49	Q8WVL7	239 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	WDR34	Q96EX3	536 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	CFAP36	Q96G28	342 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	FBXL20	Q96IG2	436 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	DACH2	Q96NX9	599 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	TRIB1	Q96RU8	372 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	OSBPL9	Q96SU4	736 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	KRT12	Q99456	494 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	PRDM14	Q9GZV8	571 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	WWOX	Q9NZC7	414 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	CAMK2A	Q9UQM7	478 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	EML6	Q6ZMW3	1958 aa		11.61	□□□□□ -0.55
SHMT2-223	ENST00000556689	FAM95C	A0A1B0GW59	222 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	CAPN14	A8MX76	684 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	EEF1E1-BLOC1S5	C9J1V9	151 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	HRK	O00198	91 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	EEF1E1	O43324	174 aa	Known RBP	11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	LRAT	O95237	230 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	LY6G6D	O95868	133 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	IL18BP	O95998	194 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	TGFB1	P01137	390 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	HRG	P04196	525 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	ELK3	P41970	407 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	TAS2R39	P59534	338 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	IRF8	Q02556	426 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	SLAMF1	Q13291	335 aa		11.6	□□□□□ -0.55
SHMT2-223	ENST00000556689	NTRK2	Q16620	822 aa		11.6	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 57 ms