RNA–Protein interactions for RNA: ENST00000556210.1

CUX1-215, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,044 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-215ENST00000556210 RIMKLAQ8IXN7 391 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 ZNF514Q96K75 400 aaPredicted RBP14.15□□□□□ -0.14
CUX1-215ENST00000556210 TEFMQ96QE5 360 aaKnown RBP14.15□□□□□ -0.14
CUX1-215ENST00000556210 BEX2Q9BXY8 128 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 PRAMEF33A0A0G2JMD5 474 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 RFXAPO00287 272 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 NRG2O14511 850 aaPredicted RBP14.15□□□□□ -0.14
CUX1-215ENST00000556210 KAT7O95251 611 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 WISP3O95389 354 aaPredicted RBP14.15□□□□□ -0.14
CUX1-215ENST00000556210 TIMP1P01033 207 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 CTSEP14091 401 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 SNAP47Q5SQN1 464 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 TRIQKQ629K1 86 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 ARRDC3Q96B67 414 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 GFM1Q96RP9 751 aaKnown RBP14.15□□□□□ -0.14
CUX1-215ENST00000556210 CPEB1Q9BZB8 566 aaKnown RBP14.15□□□□□ -0.14
CUX1-215ENST00000556210 UCK2Q9BZX2 261 aa14.15□□□□□ -0.14
CUX1-215ENST00000556210 ISPDA4D126 451 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 CCRL2O00421 344 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 PRMT3O60678 531 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 PRAMEF10O60809 474 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 GABARAPO95166 117 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 HPGDP15428 266 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 TGM3Q08188 693 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 GINS1Q14691 196 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 KLHDC8BQ8IXV7 354 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 CADM2Q8N3J6 435 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 PAPD5Q8NDF8 572 aaKnown RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 PHF21AQ96BD5 680 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 TESCQ96BS2 214 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 OR51I1Q9H343 314 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 ENOPH1Q9UHY7 261 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 PCDHGA10Q9Y5H3 936 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 WWP2O00308 870 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 GFRA2O00451 464 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 PSIP1O75475 530 aaKnown RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 HOXB6P17509 224 aaKnown RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 AK4P27144 223 aaPredicted RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 ERVK-21P61565 698 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 CSNK2BP67870 215 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 PCDH1Q08174 1060 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 PTGES3Q15185 160 aaKnown RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 ZNF311Q5JNZ3 666 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 SLCO4C1Q6ZQN7 724 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 SERPINA11Q86U17 422 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 DTD2Q96FN9 168 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 ZNF486Q96H40 463 aaPredicted RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 ZNF300Q96RE9 604 aaPredicted RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 SRMSQ9H3Y6 488 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 NMNAT1Q9HAN9 279 aaPredicted RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 CAPN5O15484 640 aaPredicted RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 ARPC4P59998 168 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 SRP54P61011 504 aaKnown RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 ZNF630Q2M218 657 aaPredicted RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 TOR1AIP1Q5JTV8 583 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 Q6ZNB5 142 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 CBLL1Q75N03 491 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 SPATC1Q76KD6 591 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 GALNT12Q8IXK2 581 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 GRHL3Q8TE85 626 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 FGF13Q92913 245 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 POP5Q969H6 163 aaKnown RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 TSACCQ96A04 125 aaPredicted RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 PIP5K1AQ99755 562 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 TMED9Q9BVK6 235 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 ZBP1Q9H171 429 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 SLC28A3Q9HAS3 691 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 C3orf14Q9HBI5 128 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 ACOT13Q9NPJ3 140 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 NDRG2Q9UN36 371 aaKnown RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 ZNF646O15015 1829 aaPredicted RBP14.14□□□□□ -0.15
CUX1-215ENST00000556210 ARID1AO14497 2285 aa14.14□□□□□ -0.15
CUX1-215ENST00000556210 A0A1W2PQU0 124 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 SNTNA6NMZ2 147 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 SLC16A5O15375 505 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 KIAA0513O60268 411 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 PRSS23O95084 383 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 CDRT1O95170 752 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 POLR2CP19387 275 aaPredicted RBP14.13□□□□□ -0.15
CUX1-215ENST00000556210 CPN2P22792 545 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 CRISP3P54108 245 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 SIM1P81133 766 aaPredicted RBP14.13□□□□□ -0.15
CUX1-215ENST00000556210 NDUFAF5Q5TEU4 345 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 L3MBTL4Q8NA19 623 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 TRIM43Q96BQ3 446 aaPredicted RBP14.13□□□□□ -0.15
CUX1-215ENST00000556210 EFHD2Q96C19 240 aaPredicted RBP14.13□□□□□ -0.15
CUX1-215ENST00000556210 OMA1Q96E52 524 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 SLC38A2Q96QD8 506 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 TEX10Q9NXF1 929 aaPredicted RBP14.13□□□□□ -0.15
CUX1-215ENST00000556210 CNIH4Q9P003 139 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 BMP7P18075 431 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 C1orf61Q13536 156 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 KIAA0040Q15053 153 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 ZNF181Q2M3W8 571 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 CYP4Z2PQ8N1L4 340 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 HORMAD2Q8N7B1 307 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 VN1R2Q8NFZ6 395 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 HERVK_113Q902F9 699 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 TRPV5Q9NQA5 729 aa14.13□□□□□ -0.15
CUX1-215ENST00000556210 SERHLQ9NQF3 203 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 79.2 ms