RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 SLC35C2Q9NQQ7 365 aa11.47□□□□□ -0.57
SHMT2-209ENST00000553949 SDR39U1Q9NRG7 319 aaPredicted RBP11.47□□□□□ -0.57
SHMT2-209ENST00000553949 SH3BP4Q9P0V3 963 aa11.47□□□□□ -0.57
SHMT2-209ENST00000553949 ATP6V1HQ9UI12 483 aa11.47□□□□□ -0.57
SHMT2-209ENST00000553949 MAPRE3Q9UPY8 281 aa11.47□□□□□ -0.57
SHMT2-209ENST00000553949 ZNF780BQ9Y6R6 833 aa11.47□□□□□ -0.57
SHMT2-209ENST00000553949 IGHV3-20A0A0C4DH32 117 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 A0A1W2PQ72 361 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 OR10H2O60403 315 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 SNX3O60493 162 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 IFNA16P05015 189 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 SLC35E2P0CK97 266 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 PRKAR1AP10644 381 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 COX6A1P12074 109 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 CPMP14384 443 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 COX7A2P14406 83 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 DDX5P17844 614 aaKnown RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 NCF2P19878 526 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ITPKBP27987 946 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 FEN1P39748 380 aaKnown RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 STT3AP46977 705 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 MRPL19P49406 292 aaKnown RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 CLNS1AP54105 237 aaKnown RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 OR4D2P58180 307 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 STX1BP61266 288 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 PLIN5Q00G26 463 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ZNF750Q32MQ0 723 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ZNF385BQ569K4 471 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 SFT2D3Q587I9 215 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 CPTPQ5TA50 214 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ATP1A1-AS1Q5TC04 95 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 CCDC81Q6ZN84 652 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 SAMD14Q8IZD0 417 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ST13P4Q8IZP2 240 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ZSCAN1Q8NBB4 408 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 OR7A2PQ8NGA2 310 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 OR11G2Q8NGC1 345 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 NUDT8Q8WV74 236 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 COQ8BQ96D53 544 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 RBM18Q96H35 190 aaKnown RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 TEX37Q96LM6 180 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ZNF681Q96N22 645 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 DGAT2Q96PD7 388 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 CCT8L2Q96SF2 557 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 PRPF18Q99633 342 aaKnown RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 WDR77Q9BQA1 342 aaPredicted RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ZNF700Q9H0M5 742 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 PNO1Q9NRX1 252 aaKnown RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 GIMAP4Q9NUV9 329 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 P4HTMQ9NXG6 502 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ZIM2Q9NZV7 527 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 ENTPD4Q9Y227 616 aa11.46□□□□□ -0.57
SHMT2-209ENST00000553949 COPG1Q9Y678 874 aaKnown RBP11.46□□□□□ -0.57
SHMT2-209ENST00000553949 IGF2RP11717 2491 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 DMXL2Q8TDJ6 3036 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 IGHV1-45A0A0A0MS14 117 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 A8MUA0 341 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 MYO1GB0I1T2 1018 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 PEX12O00623 359 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 SLC22A3O75751 556 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 SEC24DO94855 1032 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-209ENST00000553949 LAMP1P11279 417 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 PORP16435 677 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-209ENST00000553949 TNNI3P19429 210 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 GPX3P22352 226 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 IL12AP29459 219 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 ATP4BP51164 291 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 UCNP55089 124 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 IRX1P78414 480 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-209ENST00000553949 DUSP2Q05923 314 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 CDC20Q12834 499 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 ATP1A4Q13733 1029 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 SQLEQ14534 574 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 PCOLCEQ15113 449 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 ELAVL1Q15717 326 aaKnown RBP11.45□□□□□ -0.58
SHMT2-209ENST00000553949 CEBPEQ15744 281 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 MPEG1Q2M385 716 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 CPZQ66K79 652 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 PAOXQ6QHF9 649 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 DGAT2L6Q6ZPD8 337 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 NDUFAF7Q7L592 441 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 CAMKMTQ7Z624 323 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 PIGWQ7Z7B1 504 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 LRRC25Q8N386 305 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-209ENST00000553949 GLB1L3Q8NCI6 653 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-209ENST00000553949 THAP4Q8WY91 577 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 CIDECQ96AQ7 238 aaPredicted RBP11.45□□□□□ -0.58
SHMT2-209ENST00000553949 PPWD1Q96BP3 646 aaKnown RBP11.45□□□□□ -0.58
SHMT2-209ENST00000553949 TESCQ96BS2 214 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 VPS50Q96JG6 964 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 IP6K3Q96PC2 410 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 BBS4Q96RK4 519 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 ZBTB18Q99592 522 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 LPAR4Q99677 370 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 PELOQ9BRX2 385 aaKnown RBP11.45□□□□□ -0.58
SHMT2-209ENST00000553949 ZNF385DQ9H6B1 395 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 CLMPQ9H6B4 373 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 CPNE5Q9HCH3 593 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 ADAP2Q9NPF8 381 aa11.45□□□□□ -0.58
SHMT2-209ENST00000553949 ATAD3AQ9NVI7 634 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 67 ms