RNA–Protein interactions for RNA: ENST00000548436.5

PRPF40B-208, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 2

Gene PRPF40B, Length 2,059 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-208ENST00000548436 FBXL6Q8N531 539 aa17.56■□□□□ 0.4
PRPF40B-208ENST00000548436 AMDHD1Q96NU7 426 aa17.56■□□□□ 0.4
PRPF40B-208ENST00000548436 CDCA3Q99618 268 aaPredicted RBP17.56■□□□□ 0.4
PRPF40B-208ENST00000548436 APOOQ9BUR5 198 aa17.56■□□□□ 0.4
PRPF40B-208ENST00000548436 TRMT61BQ9BVS5 477 aaKnown RBP17.56■□□□□ 0.4
PRPF40B-208ENST00000548436 LMAN2LQ9H0V9 348 aa17.56■□□□□ 0.4
PRPF40B-208ENST00000548436 RMI1Q9H9A7 625 aa17.56■□□□□ 0.4
PRPF40B-208ENST00000548436 SCHIP1Q9P0W5 487 aaPredicted RBP17.56■□□□□ 0.4
PRPF40B-208ENST00000548436 GLOD5A6NK44 160 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 CDK1P06493 297 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 OR12D1P0DN82 309 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 LAMP2P13473 410 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 NCS1P62166 190 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 SYPL1Q16563 259 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 UAP1L1Q3KQV9 507 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 COLEC12Q5KU26 742 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 ANKRD54Q6NXT1 300 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 SLCO6A1Q86UG4 719 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 RBM45Q8IUH3 476 aaKnown RBP17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 DENND6BQ8NEG7 585 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 TTLQ8NG68 377 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 OR4D11Q8NGI4 311 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 OR5D16Q8NGK9 328 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 RPL3LQ92901 407 aaKnown RBP17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 RAB11FIP5Q9BXF6 653 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 SYNPO2LQ9H987 977 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 SPHK1Q9NYA1 384 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 GPR83Q9NYM4 423 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 LMCD1Q9NZU5 365 aa17.55■□□□□ 0.4
PRPF40B-208ENST00000548436 ARRDC5A6NEK1 342 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 TOR1BO14657 336 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 PFDN1O60925 122 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 DRD2P14416 443 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 CD36P16671 472 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 PTGER1P34995 402 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 TNFRSF4P43489 277 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 ADPRHP54922 357 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 RPE65Q16518 533 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 TMEM196Q5HYL7 178 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 TCTN3Q6NUS6 607 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 C16orf87Q6PH81 154 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 SZRD1Q7Z422 152 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 TAGAPQ8N103 731 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 DEPDC4Q8N2C3 294 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 JPH3Q8WXH2 748 aaPredicted RBP17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 ABTB1Q969K4 478 aaPredicted RBP17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 FAM131CQ96AQ9 280 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 MS4A6EQ96DS6 147 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 SH3YL1Q96HL8 342 aaPredicted RBP17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 OR51I1Q9H343 314 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 MVB12BQ9H7P6 319 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 SLC35C2Q9NQQ7 365 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 FTSJ1Q9UET6 329 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 M0R3G1 203 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 MAN2B1O00754 1011 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 SLC31A1O15431 190 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 SLC28A2O43868 658 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 TGFBR1P36897 503 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 LIPAP38571 399 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 KCNJ5P48544 419 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 DGKEP52429 567 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 SEC23BQ15437 767 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 TMEM35AQ53FP2 167 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 OR2L3Q8NG85 312 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 OR8K5Q8NH50 307 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 MYDGFQ969H8 173 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 TREX2Q9BQ50 279 aaPredicted RBP17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 ITPAQ9BY32 194 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 NKX2-4Q9H2Z4 354 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 FGF22Q9HCT0 170 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 PRDM7Q9NQW5 492 aa17.54■□□□□ 0.4
PRPF40B-208ENST00000548436 SCN3AQ9NY46 2000 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3DA0A087WVF3 549 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3IA0A087WXS9 549 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3EA0A087X179 549 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3KA0A087X1G2 549 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3FA6NER0 549 aaPredicted RBP17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3LB9A6J9 549 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 M0R082 166 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 PGRMC2O15173 223 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 ERI3O43414 337 aaKnown RBP17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 PDE9AO76083 593 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3HP0C7X1 549 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 CHMP24386 653 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 GPC1P35052 558 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 GRK3P35626 688 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 CTSKP43235 329 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 NCBP2P52298 156 aaKnown RBP eCLIP17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TEKQ02763 1124 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 HYAL1Q12794 435 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 SLAMF1Q13291 335 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 SLC9A5Q14940 896 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBCEQ15813 527 aaPredicted RBP17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 SYT16Q17RD7 645 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3GQ6DHY5 549 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TBC1D3CQ6IPX1 549 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 TMEM184AQ6ZMB5 413 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 OLIG3Q7RTU3 272 aa17.53■□□□□ 0.4
PRPF40B-208ENST00000548436 COMTD1Q86VU5 262 aa17.53■□□□□ 0.4
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms