RNA–Protein interactions for RNA: ENST00000548259.1

VPS29-204, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 563 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-204ENST00000548259 KRT12Q99456 494 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 PIP5K1AQ99755 562 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 RBM24Q9BX46 236 aaKnown RBP15.53■□□□□ 0.08
VPS29-204ENST00000548259 CALHM2Q9HA72 323 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 MS4A12Q9NXJ0 267 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 CTNNAL1Q9UBT7 734 aa15.53■□□□□ 0.08
VPS29-204ENST00000548259 CSPG4Q6UVK1 2322 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 FN1P02751 2386 aaKnown RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 MBD3L4A6NDZ8 208 aaPredicted RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 MBD3L3A6NE82 208 aaPredicted RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 NPEPPSL1A6NEC2 478 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 MBD3L5A6NJ08 208 aaPredicted RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 KIAA1324LA8MWY0 1029 aaPredicted RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 FBXO45P0C2W1 286 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 ZNF37AP17032 561 aaPredicted RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 CPN2P22792 545 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 CXCR5P32302 372 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 MASP1P48740 699 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 LAPTM5Q13571 262 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 TOMM20Q15388 145 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 AP5B1Q2VPB7 878 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 TMEM35AQ53FP2 167 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 POMZP3Q6PJE2 187 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 ADGRD1Q6QNK2 874 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 SCIMPQ6UWF3 145 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 PRSS57Q6UWY2 283 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 CXXC5Q7LFL8 322 aaKnown RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 PACS2Q86VP3 889 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 C9orf40Q8IXQ3 194 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 AGGF1Q8N302 714 aaeCLIP15.52■□□□□ 0.08
VPS29-204ENST00000548259 ACOT4Q8N9L9 421 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 MBD3L2Q8NHZ7 208 aaPredicted RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 GRK7Q8WTQ7 553 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 ZNF592Q92610 1267 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 DIO2Q92813 273 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 NTNG2Q96CW9 530 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 ZFP3Q96NJ6 502 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 GAL3ST4Q96RP7 486 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 NAP1L3Q99457 506 aaPredicted RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 PELOQ9BRX2 385 aaKnown RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 EFCAB11Q9BUY7 163 aa15.52■□□□□ 0.08
VPS29-204ENST00000548259 CHCHD2Q9Y6H1 151 aaPredicted RBP15.52■□□□□ 0.08
VPS29-204ENST00000548259 HIVEP2P31629 2446 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 SH3D21A4FU49 640 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 OR6C76A6NM76 312 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 H7C1Q1 480 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 CDC7O00311 574 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 IGKV3-11P04433 115 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 TMIGD3P0DMS9 266 aaPredicted RBP15.51■□□□□ 0.07
VPS29-204ENST00000548259 BMP7P18075 431 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 TLX1P31314 330 aaPredicted RBP15.51■□□□□ 0.07
VPS29-204ENST00000548259 GDF5P43026 501 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 SLC6A12P48065 614 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 TMED10P49755 219 aaKnown RBP15.51■□□□□ 0.07
VPS29-204ENST00000548259 WNT3P56703 355 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 EEF1A1P68104 462 aaKnown RBP15.51■□□□□ 0.07
VPS29-204ENST00000548259 ID2Q02363 134 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 EEF1A1P5Q5VTE0 462 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 VASNQ6EMK4 673 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 TTC27Q6P3X3 843 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 CCDC137Q6PK04 289 aaKnown RBP15.51■□□□□ 0.07
VPS29-204ENST00000548259 RNF111Q6ZNA4 994 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 CXorf67Q86X51 503 aaPredicted RBP15.51■□□□□ 0.07
VPS29-204ENST00000548259 KRTAP1-3Q8IUG1 177 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 UBE2E3Q969T4 207 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 PTCD3Q96EY7 689 aaKnown RBP15.51■□□□□ 0.07
VPS29-204ENST00000548259 VPS39Q96JC1 886 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 F2RL3Q96RI0 385 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 SECISBP2Q96T21 854 aaKnown RBP15.51■□□□□ 0.07
VPS29-204ENST00000548259 CENPKQ9BS16 269 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 SFXN3Q9BWM7 321 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 PHACTR1Q9C0D0 580 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 ACBD3Q9H3P7 528 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 PRDM7Q9NQW5 492 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 DNAJC11Q9NVH1 559 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 TRMT1Q9NXH9 659 aaKnown RBP15.51■□□□□ 0.07
VPS29-204ENST00000548259 JKAMPQ9P055 326 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 IKBKGQ9Y6K9 419 aa15.51■□□□□ 0.07
VPS29-204ENST00000548259 OR10H2O60403 315 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 CDH16O75309 829 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 TRIM3O75382 744 aaPredicted RBP15.5■□□□□ 0.07
VPS29-204ENST00000548259 HPNP05981 417 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 CYP4B1P13584 511 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 FPR1P21462 350 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 HIST1H1TP22492 207 aaPredicted RBP15.5■□□□□ 0.07
VPS29-204ENST00000548259 ATP5A1P25705 553 aaKnown RBP15.5■□□□□ 0.07
VPS29-204ENST00000548259 SSR2P43308 183 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 CDK9P50750 372 aaKnown RBP15.5■□□□□ 0.07
VPS29-204ENST00000548259 AGFG1P52594 562 aaKnown RBP15.5■□□□□ 0.07
VPS29-204ENST00000548259 DIO3P55073 304 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 NTRK2Q16620 822 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 NHSL2Q5HYW2 709 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 TEDDM1Q5T9Z0 273 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 SNX31Q8N9S9 440 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 TANKQ92844 425 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 ANKRD9Q96BM1 317 aaPredicted RBP15.5■□□□□ 0.07
VPS29-204ENST00000548259 RHBDF1Q96CC6 855 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 Q96MF0 132 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 MAPKAP1Q9BPZ7 522 aa15.5■□□□□ 0.07
VPS29-204ENST00000548259 RPF2Q9H7B2 306 aaKnown RBP15.5■□□□□ 0.07
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms