RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 J3QL48 77 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 CES2O00748 559 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 H2AFYO75367 372 aaKnown RBP11.67□□□□□ -0.54
SCAF11-208ENST00000546534 ACSL3O95573 720 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 IL18BPO95998 194 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 AHSGP02765 367 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 SERTAD2Q14140 314 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 RCN2Q14257 317 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 SLBPQ14493 270 aaKnown RBP eCLIP11.67□□□□□ -0.54
SCAF11-208ENST00000546534 SF3B4Q15427 424 aaKnown RBP eCLIP11.67□□□□□ -0.54
SCAF11-208ENST00000546534 PPP1R3AQ16821 1122 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 TRIM40Q6P9F5 258 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 ABHD17CQ6PCB6 329 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 SYDE1Q6ZW31 735 aaPredicted RBP11.67□□□□□ -0.54
SCAF11-208ENST00000546534 TXLNBQ8N3L3 684 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 SLC15A4Q8N697 577 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 MCUQ8NE86 351 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 TTLQ8NG68 377 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 GABPB2Q8TAK5 448 aaPredicted RBP11.67□□□□□ -0.54
SCAF11-208ENST00000546534 SENP5Q96HI0 755 aaPredicted RBP11.67□□□□□ -0.54
SCAF11-208ENST00000546534 SIGLEC10Q96LC7 697 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 SERPINB12Q96P63 405 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 DOHHQ9BU89 302 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 REXO4Q9GZR2 422 aaKnown RBP11.67□□□□□ -0.54
SCAF11-208ENST00000546534 COPS7BQ9H9Q2 264 aaPredicted RBP11.67□□□□□ -0.54
SCAF11-208ENST00000546534 GALNT8Q9NY28 637 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 CAMK2AQ9UQM7 478 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 EIF3LQ9Y262 564 aaKnown RBP11.67□□□□□ -0.54
SCAF11-208ENST00000546534 ZKSCAN5Q9Y2L8 839 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 SLC6A5Q9Y345 797 aa11.67□□□□□ -0.54
SCAF11-208ENST00000546534 CASKO14936 926 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 TRIM3O75382 744 aaPredicted RBP11.66□□□□□ -0.54
SCAF11-208ENST00000546534 CRLF1O75462 422 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 CLEC3AO75596 197 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 TRAPPC6AO75865 159 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 FGGP02679 453 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 IGKV3-11P04433 115 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 CCDC175P0C221 793 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 TMIGD3P0DMS9 266 aaPredicted RBP11.66□□□□□ -0.54
SCAF11-208ENST00000546534 MAGEA3P43357 314 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 FOXF2Q12947 444 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 CBLBQ13191 982 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 DCST1Q5T197 706 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 ADNP2Q6IQ32 1131 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 VN1R5Q7Z5H4 357 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 LUZP2Q86TE4 346 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 TMEM139Q8IV31 216 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 RNF10Q8N5U6 811 aaKnown RBP11.66□□□□□ -0.54
SCAF11-208ENST00000546534 C9orf106Q8NAJ2 232 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 ANKRD9Q96BM1 317 aaPredicted RBP11.66□□□□□ -0.54
SCAF11-208ENST00000546534 PERPQ96FX8 193 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 WDYHV1Q96HA8 205 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 ZNF597Q96LX8 424 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 MAPKAP1Q9BPZ7 522 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 PRDM7Q9NQW5 492 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 ARID1AO14497 2285 aa11.66□□□□□ -0.54
SCAF11-208ENST00000546534 ANKDD1BA6NHY2 528 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 HRKO00198 91 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 CDC7O00311 574 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 ERN1O75460 977 aaKnown RBP11.65□□□□□ -0.54
SCAF11-208ENST00000546534 KRT14P02533 472 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 COX7A2P14406 83 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 BMP7P18075 431 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 GNAZP19086 355 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 GSTM2P28161 218 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 SERPINB3P29508 390 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 GDF5P43026 501 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 CDK9P50750 372 aaKnown RBP11.65□□□□□ -0.54
SCAF11-208ENST00000546534 C18orf21Q32NC0 220 aaPredicted RBP11.65□□□□□ -0.54
SCAF11-208ENST00000546534 DGAT2L6Q6ZPD8 337 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 OR4N5Q8IXE1 308 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 DND1Q8IYX4 353 aaKnown RBP11.65□□□□□ -0.54
SCAF11-208ENST00000546534 DOK4Q8TEW6 326 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 MAIP1Q8WWC4 291 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 PPWD1Q96BP3 646 aaKnown RBP11.65□□□□□ -0.54
SCAF11-208ENST00000546534 PDLIM5Q96HC4 596 aaKnown RBP11.65□□□□□ -0.54
SCAF11-208ENST00000546534 F2RL3Q96RI0 385 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 BAG1Q99933 345 aaPredicted RBP11.65□□□□□ -0.54
SCAF11-208ENST00000546534 UGT2B28Q9BY64 529 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 NT5DC2Q9H857 520 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 CALHM2Q9HA72 323 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 LYRM4Q9HD34 91 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 SLC17A6Q9P2U8 582 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 GUCA1BQ9UMX6 200 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 NPFFR2Q9Y5X5 522 aa11.65□□□□□ -0.54
SCAF11-208ENST00000546534 ANKRD33BA6NCL7 494 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 FGF17O60258 216 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 WDR47O94967 919 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 HPNP05981 417 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 HPDP32754 393 aaPredicted RBP11.64□□□□□ -0.55
SCAF11-208ENST00000546534 SOX18P35713 384 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 MSH2P43246 934 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 SLCO1A2P46721 670 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 STT3AP46977 705 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 CPA2P48052 419 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 IGLV3-21P80748 117 aaPredicted RBP11.64□□□□□ -0.55
SCAF11-208ENST00000546534 CRYMQ14894 314 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 ACKR1Q16570 336 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 NTRK2Q16620 822 aa11.64□□□□□ -0.55
SCAF11-208ENST00000546534 EIPR1Q53HC9 387 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 27.3 ms