RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 MKS1Q9NXB0 559 aa14.63□□□□□ -0.07
CCDC78-216ENST00000544996 TEX10Q9NXF1 929 aaPredicted RBP14.63□□□□□ -0.07
CCDC78-216ENST00000544996 MYOTQ9UBF9 498 aa14.63□□□□□ -0.07
CCDC78-216ENST00000544996 PLLPQ9Y342 182 aa14.63□□□□□ -0.07
CCDC78-216ENST00000544996 TIMM22Q9Y584 194 aa14.63□□□□□ -0.07
CCDC78-216ENST00000544996 SCN2AQ99250 2005 aa14.63□□□□□ -0.07
CCDC78-216ENST00000544996 MYO18BQ8IUG5 2567 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 CLEC18AA5D8T8 446 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 NEURL1O76050 574 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 AGFG2O95081 481 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 SP1P08047 785 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 SLC35E2P0CK97 266 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 RNF4P78317 190 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 CLEC18BQ6UXF7 455 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 C1orf52Q8N6N3 182 aaKnown RBP14.62□□□□□ -0.07
CCDC78-216ENST00000544996 BANPQ8N9N5 519 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 CLEC18CQ8NCF0 446 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 OR4K14Q8NGD5 310 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 ZNF721Q8TF20 911 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 CHTF18Q8WVB6 975 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 NR4A3Q92570 626 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 FBXL20Q96IG2 436 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 SMC6Q96SB8 1091 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 CNPPD1Q9BV87 410 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 TMEM109Q9BVC6 243 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 FAIM2Q9BWQ8 316 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 ERVK-11Q9UQG0 969 aa14.62□□□□□ -0.07
CCDC78-216ENST00000544996 CPAMD8Q8IZJ3 1885 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 SPENQ96T58 3664 aaKnown RBP14.61□□□□□ -0.07
CCDC78-216ENST00000544996 C1orf226A1L170 272 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 WASHC1A8K0Z3 465 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 WWP2O00308 870 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 UBFD1O14562 309 aaKnown RBP14.61□□□□□ -0.07
CCDC78-216ENST00000544996 PGRMC2O15173 223 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 PRKNO60260 465 aaPredicted RBP14.61□□□□□ -0.07
CCDC78-216ENST00000544996 TRIM13O60858 407 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 OR2J2O76002 312 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 GALNSP34059 522 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 DEKP35659 375 aaKnown RBP14.61□□□□□ -0.07
CCDC78-216ENST00000544996 TRA2BP62995 288 aaKnown RBP14.61□□□□□ -0.07
CCDC78-216ENST00000544996 ACSM2AQ08AH3 577 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 SPRED3Q2MJR0 410 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 SPIN4Q56A73 249 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 ACSM2BQ68CK6 577 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 ZNF324BQ6AW86 544 aaPredicted RBP14.61□□□□□ -0.07
CCDC78-216ENST00000544996 GALNTL5Q7Z4T8 443 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 C10orf107Q8IVU9 208 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 GPALPP1Q8IXQ4 340 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 CYP4Z2PQ8N1L4 340 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 ZNF321PQ8N8H1 164 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 ASB15Q8WXK1 588 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 KCNA7Q96RP8 456 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 HES7Q9BYE0 225 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 ACPTQ9BZG2 426 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 LIN28AQ9H9Z2 209 aaKnown RBP14.61□□□□□ -0.07
CCDC78-216ENST00000544996 MCM8Q9UJA3 840 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 RAB21Q9UL25 225 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 PSME2Q9UL46 239 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 PCDHA9Q9Y5H5 950 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 NBASA2RRP1 2371 aa14.61□□□□□ -0.07
CCDC78-216ENST00000544996 GNG14A0A1W2PPG7 69 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 GOLGA6L10A6NI86 522 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 TMEM200CA6NKL6 621 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 A8MVJ9 347 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 NME2P1O60361 137 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 IGKV3-11P04433 115 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 NME2P22392 152 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 XKP51811 444 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 HK2P52789 917 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 PMP22Q01453 160 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 ZNF267Q14586 743 aaPredicted RBP14.6□□□□□ -0.07
CCDC78-216ENST00000544996 IMPG1Q17R60 797 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 KRT71Q3SY84 523 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 SPDYAQ5MJ70 313 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 C6orf163Q5TEZ5 329 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 NUBPLQ8TB37 319 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 SREK1Q8WXA9 508 aaKnown RBP14.6□□□□□ -0.07
CCDC78-216ENST00000544996 UCN3Q969E3 161 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 TM4SF18Q96CE8 201 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 FAM111AQ96PZ2 611 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 TRMOQ9BU70 441 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 TIMMDC1Q9NPL8 285 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 HPF1Q9NWY4 346 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 SENP1Q9P0U3 644 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 KLF13Q9Y2Y9 288 aaPredicted RBP14.6□□□□□ -0.07
CCDC78-216ENST00000544996 CNTRLQ7Z7A1 2325 aa14.6□□□□□ -0.07
CCDC78-216ENST00000544996 SERTM1A2A2V5 107 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 KLRC4-KLRK1H3BQV0 150 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 PCDH7O60245 1069 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 SPAG7O75391 227 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 UROSP10746 265 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 CHN1P15882 459 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 ALDH9A1P49189 494 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 HTR6P50406 440 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 FOXA1P55317 472 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 ERVK-8P63133 956 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 HMGCS1Q01581 520 aa14.59□□□□□ -0.07
CCDC78-216ENST00000544996 ALDH6A1Q02252 535 aaKnown RBP14.59□□□□□ -0.07
CCDC78-216ENST00000544996 SRSF1Q07955 248 aaKnown RBP eCLIP14.59□□□□□ -0.07
CCDC78-216ENST00000544996 PCLAFQ15004 111 aa14.59□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms