RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 MBOAT1Q6ZNC8 495 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 RAB11FIP2Q7L804 512 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 ARHGAP22Q7Z5H3 698 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CROCCP2Q86T23 111 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 ISCA2Q86U28 154 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 FAM129CQ86XR2 697 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 KMT5CQ86Y97 462 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 PEX5LQ8IYB4 626 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CENPLQ8N0S6 344 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CARFQ8N187 725 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 FBXO39Q8N4B4 442 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 LINC01555Q8NAE3 123 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 PPFIBP2Q8ND30 876 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 WDR36Q8NI36 951 aaKnown RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 ACMSDQ8TDX5 336 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 ZNF480Q8WV37 535 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 ASB15Q8WXK1 588 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 HOXB13Q92826 284 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 EXT2Q93063 718 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 PTERQ96BW5 349 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 FBXL8Q96CD0 374 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 LIN37Q96GY3 246 aaPredicted RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 VPS50Q96JG6 964 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 PCBD2Q9H0N5 130 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 ATG10Q9H0Y0 220 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 ZNF768Q9H5H4 540 aaKnown RBP4.86□□□□□ -1.63
CLIP1-217ENST00000543205 SOHLH2Q9NX45 425 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 CD274Q9NZQ7 290 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 GPR160Q9UJ42 338 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 SATB2Q9UPW6 733 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 NEUROG3Q9Y4Z2 214 aa4.86□□□□□ -1.63
CLIP1-217ENST00000543205 IGHV5-51A0A0C4DH38 117 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 A0A0J9YY10 115 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 A0A1W2PPM1 405 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 SLC9B1P1A6NJY1 282 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 GOLGA8RI6L899 631 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 RGS16O15492 202 aaPredicted RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 NPHS1O60500 1241 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 KIAA0754O94854 1291 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 ERGP11308 486 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 NELFEP18615 380 aaKnown RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 PSMB5P28074 263 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 RBMS1P29558 406 aaKnown RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 PEBP1P30086 187 aaKnown RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 POLE2P56282 527 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 RPL11P62913 178 aaKnown RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 FOXM1Q08050 763 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 ZNF844Q08AG5 666 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 NAE1Q13564 534 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 C16orf72Q14CZ0 275 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 SMU1Q2TAY7 513 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 GALNTL6Q49A17 601 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 CDKL4Q5MAI5 379 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 CEP85LQ5SZL2 805 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 SULT1C3Q6IMI6 304 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 GALNT18Q6P9A2 607 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 CYB5D1Q6P9G0 228 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 INO80CQ6PI98 192 aaPredicted RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 PET117Q6UWS5 81 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 LRIG3Q6UXM1 1119 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 TRIM73Q86UV7 250 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 FAM90A1Q86YD7 464 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 TCAIMQ8N3R3 496 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 POGLUT1Q8NBL1 392 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 NFKBIDQ8NI38 313 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 RHEBL1Q8TAI7 183 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 MR1Q95460 341 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 ZIM3Q96PE6 472 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 RUFY1Q96T51 708 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 PIP5K1AQ99755 562 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 SPXQ9BT56 116 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 TMEM109Q9BVC6 243 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 PITPNM3Q9BZ71 974 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 CENPHQ9H3R5 247 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 CNOT10Q9H9A5 744 aaKnown RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 POLR1BQ9H9Y6 1135 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 MRPS30Q9NP92 439 aaKnown RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 DDX18Q9NVP1 670 aaKnown RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 WWOXQ9NZC7 414 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 NUDT4Q9NZJ9 180 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 PISDQ9UG56 409 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 TAC3Q9UHF0 121 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 DCDC2Q9UHG0 476 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 ASXL3Q9C0F0 2248 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 NAV2Q8IVL1 2488 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 RP1P56715 2156 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 A0A1W2PPV9 198 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 A0A1W2PRV1 198 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 FAM90A18PA6NE21 464 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 FAM90A16PA6NEW6 464 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 PRAMEF25A6NGN4 478 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 GOLGA6L10A6NI86 522 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 FAM90A9PA6NNJ1 464 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 FAM90A5PA8MXJ8 464 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 FOXO6A8MYZ6 492 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 COPEO14579 308 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 PRICKLE3O43900 615 aaPredicted RBP4.85□□□□□ -1.63
CLIP1-217ENST00000543205 COQ9O75208 318 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 SMIM24O75264 130 aa4.85□□□□□ -1.63
CLIP1-217ENST00000543205 GSTA1P08263 222 aa4.85□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms