RNA–Protein interactions for RNA: ENST00000543140.5

COL4A1-204, Transcript of collagen type IV alpha 1 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A1, Length 2,547 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-204ENST00000543140 APOBEC3BQ9UH17 382 aaKnown RBP15.46■□□□□ 0.06
COL4A1-204ENST00000543140 SCML1Q9UN30 329 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 TPRKBQ9Y3C4 175 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 ASB4Q9Y574 426 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 PCDHGA4Q9Y5G9 962 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 HEBP2Q9Y5Z4 205 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 ENPP4Q9Y6X5 453 aa15.46■□□□□ 0.06
COL4A1-204ENST00000543140 FAM227AF5H4B4 570 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 DNAJB5O75953 348 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 DDX5P17844 614 aaKnown RBP15.45■□□□□ 0.06
COL4A1-204ENST00000543140 LIM2P55344 173 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 TUBA3CQ13748 450 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 ADPRMQ3LIE5 342 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 USP30Q70CQ3 517 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 TRIM73Q86UV7 250 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 CCDC116Q8IYX3 515 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 KCT2Q8NC54 265 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 OR2L5Q8NG80 312 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 GPR32P1Q8NGA4 272 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 PHF10Q8WUB8 498 aaKnown RBP15.45■□□□□ 0.06
COL4A1-204ENST00000543140 PITX2Q99697 317 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 FUNDC2Q9BWH2 189 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 OR51I1Q9H343 314 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 TAS2R7Q9NYW3 318 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 NAALAD2Q9Y3Q0 740 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 TCRBV21S2A2A0A5A6 115 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 PRAMEF27A3QJZ7 478 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 MFN2O95140 757 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 ASGR2P07307 311 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 JUNDP17535 347 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 CCNA2P20248 432 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 HTR1BP28222 390 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 AHRP35869 848 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 FEN1P39748 380 aaKnown RBP15.45■□□□□ 0.06
COL4A1-204ENST00000543140 IDH2P48735 452 aaKnown RBP15.45■□□□□ 0.06
COL4A1-204ENST00000543140 DGKEP52429 567 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 TMBIM6P55061 237 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 GP2P55259 537 aaKnown RBP15.45■□□□□ 0.06
COL4A1-204ENST00000543140 KIAA1024LP59773 190 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 TRA2BP62995 288 aaKnown RBP15.45■□□□□ 0.06
COL4A1-204ENST00000543140 DUSP2Q05923 314 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 SLC30A8Q8IWU4 369 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 FRMD1Q8N878 549 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 VANGL1Q8TAA9 524 aaPredicted RBP15.45■□□□□ 0.06
COL4A1-204ENST00000543140 FAM81AQ8TBF8 368 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 FAR1Q8WVX9 515 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 APH1BQ8WW43 257 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 GAB3Q8WWW8 586 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 THAP11Q96EK4 314 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 CNDP2Q96KP4 475 aaKnown RBP15.45■□□□□ 0.06
COL4A1-204ENST00000543140 COL21A1Q96P44 957 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 SRMSQ9H3Y6 488 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 DUSP21Q9H596 190 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 KCNK12Q9HB15 430 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 AMBNQ9NP70 447 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 RNF6Q9Y252 685 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 PCDHGA10Q9Y5H3 936 aa15.45■□□□□ 0.06
COL4A1-204ENST00000543140 FFAR1O14842 300 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 AIFM1O95831 613 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 DRD1P21728 446 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 CD6P30203 668 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 SNRPNP63162 240 aaKnown RBP15.44■□□□□ 0.06
COL4A1-204ENST00000543140 AHSA2Q719I0 299 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 RBM45Q8IUH3 476 aaKnown RBP15.44■□□□□ 0.06
COL4A1-204ENST00000543140 PARP8Q8N3A8 854 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 TBC1D19Q8N5T2 526 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 HMGB4Q8WW32 186 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 CNRIP1Q96F85 164 aaPredicted RBP15.44■□□□□ 0.06
COL4A1-204ENST00000543140 SLC35G5Q96KT7 338 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 TREX2Q9BQ50 279 aaPredicted RBP15.44■□□□□ 0.06
COL4A1-204ENST00000543140 WFDC6Q9BQY6 131 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 KLHL25Q9H0H3 589 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 ANKRA2Q9H9E1 313 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 OR6C2Q9NZP2 312 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 TMEM9Q9P0T7 183 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 CD207Q9UJ71 328 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 PCDHGA2Q9Y5H1 932 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 ZNF99A8MXY4 864 aaPredicted RBP15.44■□□□□ 0.06
COL4A1-204ENST00000543140 M0R129 80 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 FADS2O95864 444 aaKnown RBP15.44■□□□□ 0.06
COL4A1-204ENST00000543140 ANXA8P13928 327 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 RHCEP18577 417 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 NTSP30990 170 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 GSTM5P46439 218 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 NFATC3Q12968 1075 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 PROX2Q3B8N5 592 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 ZNF425Q6IV72 752 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 NLGN4XQ8N0W4 816 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 TAGAPQ8N103 731 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 MFSD9Q8NBP5 474 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 UTP15Q8TED0 518 aaKnown RBP15.44■□□□□ 0.06
COL4A1-204ENST00000543140 PROX1Q92786 737 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 MSLNLQ96KJ4 702 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 ALPK1Q96QP1 1244 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 SNX7Q9UNH6 387 aa15.44■□□□□ 0.06
COL4A1-204ENST00000543140 H3BQ06 376 aaPredicted RBP15.43■□□□□ 0.06
COL4A1-204ENST00000543140 ZW10O43264 779 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 KDM1AO60341 852 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 NDUFS2O75306 463 aa15.43■□□□□ 0.06
COL4A1-204ENST00000543140 NME6O75414 186 aaPredicted RBP15.43■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 83.4 ms