RNA–Protein interactions for RNA: ENST00000540747.1

YBX3-209, Transcript of Y-box binding protein 3, humanhuman

TSL 5

Gene YBX3, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-209ENST00000540747 SPACA9Q96E40 222 aaPredicted RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 CERS2Q96G23 380 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 FAR2Q96K12 515 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 RHOXF2Q9BQY4 288 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 TMEM79Q9BSE2 394 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 REXO4Q9GZR2 422 aaKnown RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 RYDENQ9NUL5 291 aaKnown RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 BEX4Q9NWD9 120 aaPredicted RBP6.71□□□□□ -1.34
YBX3-209ENST00000540747 GPRC5BQ9NZH0 403 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 OARD1Q9Y530 152 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 MED12Q93074 2177 aa6.71□□□□□ -1.34
YBX3-209ENST00000540747 ROS1P08922 2347 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 ANKRD33BA6NCL7 494 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 MBD3L4A6NDZ8 208 aaPredicted RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 MBD3L3A6NE82 208 aaPredicted RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 MBD3L5A6NJ08 208 aaPredicted RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 CD8B2A6NJW9 211 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 CLCA1A8K7I4 914 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 AHRRA9YTQ3 701 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 TAPBPO15533 448 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 FGF17O60258 216 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 LDB3O75112 727 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 IL18BPO95998 194 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 C1QAP02745 245 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 IFNA16P05015 189 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 ATP5A1P25705 553 aaKnown RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 IVDP26440 423 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 STT3AP46977 705 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 TBL3Q12788 808 aaKnown RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 RCN2Q14257 317 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 TSNQ15631 228 aaKnown RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 NTRK2Q16620 822 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 NHSL2Q5HYW2 709 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 PRAMEF20Q5VT98 475 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 VASNQ6EMK4 673 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 TRIM40Q6P9F5 258 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 CCDC137Q6PK04 289 aaKnown RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 CLEC9AQ6UXN8 241 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 CHSY3Q70JA7 882 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 Q71RC1 249 aaPredicted RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 ADAMTSL2Q86TH1 951 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 ZC3HC1Q86WB0 502 aaKnown RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 DND1Q8IYX4 353 aaKnown RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 KRT78Q8N1N4 520 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 TRIM58Q8NG06 486 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 OR10G3Q8NGC4 313 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 MBD3L2Q8NHZ7 208 aaPredicted RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 MAGOHBQ96A72 148 aaKnown RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 SENP5Q96HI0 755 aaPredicted RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 FBXL20Q96IG2 436 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 CAPZA3Q96KX2 299 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 F2RL3Q96RI0 385 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 TIMP4Q99727 224 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 MAPKAP1Q9BPZ7 522 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 NAT9Q9BTE0 207 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 MS4A8Q9BY19 250 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 LDAHQ9H6V9 325 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 CNIH4Q9P003 139 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 MTRF1LQ9UGC7 380 aaKnown RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 PRDM4Q9UKN5 801 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 RAB21Q9UL25 225 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 BOKQ9UMX3 212 aaPredicted RBP6.7□□□□□ -1.34
YBX3-209ENST00000540747 PSAT1Q9Y617 370 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 DOCK7Q96N67 2140 aa6.7□□□□□ -1.34
YBX3-209ENST00000540747 NINQ8N4C6 2090 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 PABPN1LA6NDY0 278 aaKnown RBP6.69□□□□□ -1.34
YBX3-209ENST00000540747 TUBAL3A6NHL2 446 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 DNALI1O14645 258 aaPredicted RBP6.69□□□□□ -1.34
YBX3-209ENST00000540747 H2AFYO75367 372 aaKnown RBP6.69□□□□□ -1.34
YBX3-209ENST00000540747 WDR47O94967 919 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 LY6G6DO95868 133 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 HPNP05981 417 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 FREM3P0C091 2139 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 HIST1H1TP22492 207 aaPredicted RBP6.69□□□□□ -1.34
YBX3-209ENST00000540747 HPDP32754 393 aaPredicted RBP6.69□□□□□ -1.34
YBX3-209ENST00000540747 SOX18P35713 384 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 CASP2P42575 452 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 PAFAH1B1P43034 410 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 KCNC1P48547 511 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 TRPC1P48995 793 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 FNTAP49354 379 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 CDK9P50750 372 aaKnown RBP6.69□□□□□ -1.34
YBX3-209ENST00000540747 TAS2R39P59534 338 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 KCNJ2P63252 427 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 ID2Q02363 134 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 PCDH1Q08174 1060 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 STX4Q12846 297 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 DUSP8Q13202 625 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 KEAP1Q14145 624 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 DOC2AQ14183 400 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 ZNF460Q14592 562 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 EBPQ15125 230 aaKnown RBP6.69□□□□□ -1.34
YBX3-209ENST00000540747 TBCCQ15814 346 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 SPRED3Q2MJR0 410 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 HSP90B2PQ58FF3 399 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 CDKL4Q5MAI5 379 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 DCST1Q5T197 706 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 SHEQ5VZ18 495 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 ADGRE4PQ86SQ3 457 aa6.69□□□□□ -1.34
YBX3-209ENST00000540747 KIF18BQ86Y91 864 aa6.69□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 46.3 ms