RNA–Protein interactions for RNA: ENST00000539522.2

CCDC42-202, Transcript of coiled-coil domain containing 42, humanhuman

TSL 1 (best) BASIC

Gene CCDC42, Length 1,087 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC42-202ENST00000539522 PPP3R2Q96LZ3 170 aa12.17□□□□□ -0.46
CCDC42-202ENST00000539522 PTCHD1Q96NR3 888 aa12.17□□□□□ -0.46
CCDC42-202ENST00000539522 RPF2Q9H7B2 306 aaKnown RBP12.17□□□□□ -0.46
CCDC42-202ENST00000539522 MYNNQ9NPC7 610 aa12.17□□□□□ -0.46
CCDC42-202ENST00000539522 PRTFDC1Q9NRG1 225 aa12.17□□□□□ -0.46
CCDC42-202ENST00000539522 P4HTMQ9NXG6 502 aa12.17□□□□□ -0.46
CCDC42-202ENST00000539522 ASIC5Q9NY37 505 aa12.17□□□□□ -0.46
CCDC42-202ENST00000539522 PHF11Q9UIL8 331 aa12.17□□□□□ -0.46
CCDC42-202ENST00000539522 HRKO00198 91 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 HNRNPCL1O60812 293 aaKnown RBP12.16□□□□□ -0.46
CCDC42-202ENST00000539522 CLPSP04118 112 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 CD63P08962 238 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 C8orf89P0DMQ9 161 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 G6PDP11413 515 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ACPPP15309 386 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ZFP36L2P47974 494 aaKnown RBP12.16□□□□□ -0.46
CCDC42-202ENST00000539522 RASSF2P50749 326 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ATP4BP51164 291 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 GPR143P51810 404 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 TMPRSS3P57727 454 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 CXADRP78310 365 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 EMX2Q04743 252 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ZNF763Q0D2J5 394 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 CHAF1BQ13112 559 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 NSDHLQ15738 373 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 GSTA3Q16772 222 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 COL28A1Q2UY09 1125 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 LINC00303Q3SY05 128 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ATP6AP1LQ52LC2 224 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 IL23RQ5VWK5 629 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ANKRD26P1Q6NSI1 321 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 PCSK4Q6UW60 755 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 LRRC69Q6ZNQ3 347 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 RIMKLAQ8IXN7 391 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 LIX1Q8N485 282 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ZNF321PQ8N8H1 164 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ADAMTS18Q8TE60 1221 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 DOK4Q8TEW6 326 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 PTPMT1Q8WUK0 201 aaPredicted RBP12.16□□□□□ -0.46
CCDC42-202ENST00000539522 TEX37Q96LM6 180 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 TSSK3Q96PN8 268 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 EFHD1Q9BUP0 239 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ZNF700Q9H0M5 742 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 SLAMF7Q9NQ25 335 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 MS4A12Q9NXJ0 267 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 ZNF223Q9UK11 482 aaPredicted RBP12.16□□□□□ -0.46
CCDC42-202ENST00000539522 FBXL4Q9UKA2 621 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 MMACHCQ9Y4U1 282 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 KCNMB2Q9Y691 235 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 CPAMD8Q8IZJ3 1885 aa12.16□□□□□ -0.46
CCDC42-202ENST00000539522 GNG14A0A1W2PPG7 69 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 PSMD12O00232 456 aaPredicted RBP12.15□□□□□ -0.46
CCDC42-202ENST00000539522 DNAJB5O75953 348 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 LRATO95237 230 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 CYC1P08574 325 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 JAK1P23458 1154 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 PRDX6P30041 224 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 MNAT1P51948 309 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 MGAT2Q10469 447 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 KLF10Q13118 480 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 MAD2L1Q13257 205 aaPredicted RBP12.15□□□□□ -0.46
CCDC42-202ENST00000539522 PDE7AQ13946 482 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 UBAP2LQ14157 1087 aaKnown RBP12.15□□□□□ -0.46
CCDC42-202ENST00000539522 SQLEQ14534 574 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 RPS6KA2Q15349 733 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 CEBPEQ15744 281 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 DEFB109BQ30KR1 87 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 SFT2D3Q587I9 215 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 MFSD4BQ5TF39 518 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 CPEB2Q7Z5Q1 589 aaKnown RBP12.15□□□□□ -0.46
CCDC42-202ENST00000539522 KRTCAP2Q8N6L1 136 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 FNDC5Q8NAU1 212 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 SIMC1Q8NDZ2 872 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 SUN3Q8TAQ9 357 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 TANKQ92844 425 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 GFM2Q969S9 779 aaKnown RBP12.15□□□□□ -0.46
CCDC42-202ENST00000539522 PPWD1Q96BP3 646 aaKnown RBP12.15□□□□□ -0.46
CCDC42-202ENST00000539522 CMTM5Q96DZ9 223 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 MARK4Q96L34 752 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 CATSPER2Q96P56 530 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 ALOXE3Q9BYJ1 711 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 ZNF385DQ9H6B1 395 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 ARL8BQ9NVJ2 186 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 TMEM45AQ9NWC5 275 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 ARMCX1Q9P291 453 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 G3BP2Q9UN86 482 aaKnown RBP12.15□□□□□ -0.46
CCDC42-202ENST00000539522 ERVK-11Q9UQG0 969 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 TMED5Q9Y3A6 229 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 GPR45Q9Y5Y3 372 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 CAPN7Q9Y6W3 813 aa12.15□□□□□ -0.46
CCDC42-202ENST00000539522 SMG1Q96Q15 3661 aaKnown RBP12.15□□□□□ -0.47
CCDC42-202ENST00000539522 TNRC6AQ8NDV7 1962 aaKnown RBP12.14□□□□□ -0.47
CCDC42-202ENST00000539522 C1orf226A1L170 272 aa12.14□□□□□ -0.47
CCDC42-202ENST00000539522 ARGFXA6NJG6 315 aa12.14□□□□□ -0.47
CCDC42-202ENST00000539522 A8MUA0 341 aa12.14□□□□□ -0.47
CCDC42-202ENST00000539522 SEC24DO94855 1032 aaPredicted RBP12.14□□□□□ -0.47
CCDC42-202ENST00000539522 GPR75O95800 540 aa12.14□□□□□ -0.47
CCDC42-202ENST00000539522 DDAH2O95865 285 aa12.14□□□□□ -0.47
CCDC42-202ENST00000539522 CT62P0C5K7 136 aa12.14□□□□□ -0.47
CCDC42-202ENST00000539522 T-ENOLP0DO92 83 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 40.3 ms