RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 ST13P4Q8IZP2 240 aaPredicted RBP13.73□□□□□ -0.21
USP28-204ENST00000537642 CPSF7Q8N684 471 aaKnown RBP13.73□□□□□ -0.21
USP28-204ENST00000537642 FAM98AQ8NCA5 519 aaKnown RBP13.73□□□□□ -0.21
USP28-204ENST00000537642 OR8K3Q8NH51 312 aa13.73□□□□□ -0.21
USP28-204ENST00000537642 DOK4Q8TEW6 326 aa13.73□□□□□ -0.21
USP28-204ENST00000537642 RBM18Q96H35 190 aaKnown RBP13.73□□□□□ -0.21
USP28-204ENST00000537642 SENP5Q96HI0 755 aaPredicted RBP13.73□□□□□ -0.21
USP28-204ENST00000537642 RASL10BQ96S79 203 aa13.73□□□□□ -0.21
USP28-204ENST00000537642 HBEGFQ99075 208 aa13.73□□□□□ -0.21
USP28-204ENST00000537642 GSTO2Q9H4Y5 243 aa13.73□□□□□ -0.21
USP28-204ENST00000537642 WDR41Q9HAD4 459 aa13.73□□□□□ -0.21
USP28-204ENST00000537642 GTF3C1Q12789 2109 aa13.73□□□□□ -0.21
USP28-204ENST00000537642 A0A1W2PS29 197 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 ZNF354AO60765 605 aaPredicted RBP13.72□□□□□ -0.21
USP28-204ENST00000537642 OR6B1O95007 311 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 MLYCDO95822 493 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 CRHR1P34998 444 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 SOX3P41225 446 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 RNFT1Q5M7Z0 435 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 CCNYL2Q5T2Q4 361 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 C1QL3Q5VWW1 255 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 OR52E8Q6IFG1 317 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 SIAH3Q8IW03 269 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 SULF2Q8IWU5 870 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 C9orf40Q8IXQ3 194 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 ASB15Q8WXK1 588 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 FBXL20Q96IG2 436 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 PELOQ9BRX2 385 aaKnown RBP13.72□□□□□ -0.21
USP28-204ENST00000537642 TSPAN10Q9H1Z9 355 aaPredicted RBP13.72□□□□□ -0.21
USP28-204ENST00000537642 C12orf65Q9H3J6 166 aaKnown RBP13.72□□□□□ -0.21
USP28-204ENST00000537642 COPS7AQ9UBW8 275 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 KLF13Q9Y2Y9 288 aaPredicted RBP13.72□□□□□ -0.21
USP28-204ENST00000537642 CROCCQ5TZA2 2017 aa13.72□□□□□ -0.21
USP28-204ENST00000537642 UTP20O75691 2785 aaKnown RBP13.72□□□□□ -0.21
USP28-204ENST00000537642 ARHGAP10A1A4S6 786 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 A8MVJ9 347 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 NPIPA5E9PKD4 350 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 DYRK3O43781 588 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 PEX1O43933 1283 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 ZNF500O60304 480 aaPredicted RBP13.71□□□□□ -0.21
USP28-204ENST00000537642 OR10H2O60403 315 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 PLIN3O60664 434 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 CDH16O75309 829 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 KRT6AP02538 564 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 KRT6BP04259 564 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 SLC35E2P0CK97 266 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 MYL2P10916 166 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 CHN1P15882 459 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 GALNSP34059 522 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 CCT5P48643 541 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 KRT6CP48668 564 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 MEOX1P50221 254 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 HTR6P50406 440 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 MAPK12P53778 367 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 ERVK-8P63133 956 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 LCP2Q13094 533 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 ZNF267Q14586 743 aaPredicted RBP13.71□□□□□ -0.21
USP28-204ENST00000537642 SPRED3Q2MJR0 410 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 NDUFAF5Q5TEU4 345 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 IL20RBQ6UXL0 311 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 GPALPP1Q8IXQ4 340 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 OR5L2Q8NGL0 311 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 OR2W6PQ8NHA6 318 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 METTL6Q8TCB7 284 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 AGAP11Q8TF27 550 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 ART5Q96L15 291 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 GPR137Q96N19 417 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 CNPPD1Q9BV87 410 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 HPF1Q9NWY4 346 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 VPS29Q9UBQ0 182 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 PLEKHB1Q9UF11 243 aaPredicted RBP13.71□□□□□ -0.21
USP28-204ENST00000537642 GRID1Q9ULK0 1009 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 NPIPA1Q9UND3 350 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 ERVK-11Q9UQG0 969 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 ERVK-19Q9WJR5 959 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 STK38LQ9Y2H1 464 aa13.71□□□□□ -0.21
USP28-204ENST00000537642 A1L4Q6 167 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 UBFD1O14562 309 aaKnown RBP13.7□□□□□ -0.22
USP28-204ENST00000537642 ESRRBO95718 433 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 CLPSP04118 112 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 ENO1P06733 434 aaKnown RBP13.7□□□□□ -0.22
USP28-204ENST00000537642 HSD3B1P14060 373 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 KRT4P19013 534 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 HSD3B2P26439 372 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 PIK3R1P27986 724 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 HMOX2P30519 316 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 PKNOX1P55347 436 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 SLC18A2Q05940 514 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 CSTF3Q12996 717 aaKnown RBP13.7□□□□□ -0.22
USP28-204ENST00000537642 MPEG1Q2M385 716 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 CCDC153Q494R4 210 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 KRTCAP3Q53RY4 240 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 HIST2H2BCQ6DN03 193 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 FJX1Q86VR8 437 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 MMP21Q8N119 569 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 C4orf33Q8N1A6 199 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 C1orf52Q8N6N3 182 aaKnown RBP13.7□□□□□ -0.22
USP28-204ENST00000537642 CCNYL1Q8N7R7 359 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 POGLUT1Q8NBL1 392 aa13.7□□□□□ -0.22
USP28-204ENST00000537642 PSD4Q8NDX1 1056 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms