RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 PAQR8Q8TEZ7 354 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 TANKQ92844 425 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SARAFQ96BY9 339 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SPACA9Q96E40 222 aaPredicted RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 FBXL20Q96IG2 436 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 ART5Q96L15 291 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 C16orf45Q96MC5 204 aaPredicted RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 ZNF559Q9BR84 538 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SORBS1Q9BX66 1292 aaKnown RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 OR51B5Q9H339 312 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 ZNF703Q9H7S9 590 aaPredicted RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 NMRAL1Q9HBL8 299 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SEMA4BQ9NPR2 832 aaPredicted RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 IGSF5Q9NSI5 407 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 RYDENQ9NUL5 291 aaKnown RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 ACAD8Q9UKU7 415 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 TSC22D4Q9Y3Q8 395 aa10.47□□□□□ -0.73
VPS28-214ENST00000531032 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.47□□□□□ -0.73
VPS28-214ENST00000531032 MTORP42345 2549 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 TRGV5A0A0B4J1U4 118 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 A0A0G2JNJ9 132 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 LRRC3CA6NJW4 275 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 HRKO00198 91 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 PLPP1O14494 284 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 DYRK3O43781 588 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 FAM155BO75949 473 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 LTA4HP09960 611 aaKnown RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 MTHFD2P13995 350 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 CD1EP15812 388 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 ALOX15P16050 662 aaPredicted RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 EPB42P16452 691 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 CRABP2P29373 138 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 TLX1P31314 330 aaPredicted RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 ADH7P40394 386 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 HNRNPH2P55795 449 aaKnown RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 SLMAPQ14BN4 828 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 SPRED3Q2MJR0 410 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 KBTBD12Q3ZCT8 623 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 C1orf185Q5T7R7 199 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 WLSQ5T9L3 541 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 CES4AQ5XG92 561 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 SLC22A10Q63ZE4 541 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 C18orf63Q68DL7 685 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 C8orf74Q6P047 294 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 RAPH1Q70E73 1250 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 TBC1D1Q86TI0 1168 aaPredicted RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 GPR180Q86V85 440 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 LIX1LQ8IVB5 337 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 CTAGE3PQ8IX95 158 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 ST13P4Q8IZP2 240 aaPredicted RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 LRRC25Q8N386 305 aaPredicted RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 FBXW8Q8N3Y1 598 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 RNF175Q8N4F7 328 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 RGMAQ96B86 450 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 PPWD1Q96BP3 646 aaKnown RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 RBM18Q96H35 190 aaKnown RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 PELOQ9BRX2 385 aaKnown RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 CENPKQ9BS16 269 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 ZNF717Q9BY31 904 aaPredicted RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 LDAHQ9H6V9 325 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 PROK2Q9HC23 129 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 ZFP64Q9NPA5 681 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 DMRT3Q9NQL9 472 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 SDAD1Q9NVU7 687 aaKnown RBP eCLIP10.46□□□□□ -0.73
VPS28-214ENST00000531032 SPRR3Q9UBC9 169 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 Q9UFV3 132 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 PHF11Q9UIL8 331 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 BOKQ9UMX3 212 aaPredicted RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 L3MBTL1Q9Y468 752 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 PCDHGB3Q9Y5G1 929 aa10.46□□□□□ -0.73
VPS28-214ENST00000531032 CHCHD2Q9Y6H1 151 aaPredicted RBP10.46□□□□□ -0.73
VPS28-214ENST00000531032 NCKAP5O14513 1909 aa10.46□□□□□ -0.74
VPS28-214ENST00000531032 NF1P21359 2839 aa10.46□□□□□ -0.74
VPS28-214ENST00000531032 ZFHX3Q15911 3703 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 ARHGAP21Q5T5U3 1957 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 A0A0A6YYD5 115 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 CCDC189A1A4V9 331 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 FAM47E-STBD1D6RA91 191 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 PROM1O43490 865 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 PRKRAO75569 313 aaKnown RBP10.45□□□□□ -0.74
VPS28-214ENST00000531032 URI1O94763 535 aaPredicted RBP10.45□□□□□ -0.74
VPS28-214ENST00000531032 FBXO45P0C2W1 286 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 RFPL3SP0C7P2 107 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 GABRA1P14867 456 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 STX2P32856 288 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 BUD31P41223 144 aaPredicted RBP10.45□□□□□ -0.74
VPS28-214ENST00000531032 RAP1GDS1P52306 607 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 PLTPP55058 493 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 DLX5P56178 289 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 SLC37A1P57057 533 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 HERVK_113P63132 956 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 ERVK-8P63133 956 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 KCNJ2P63252 427 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 CAV1Q03135 178 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 MYBPHQ13203 477 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 NAB1Q13506 487 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 DDX39BQ13838 428 aaKnown RBP10.45□□□□□ -0.74
VPS28-214ENST00000531032 SETDB1Q15047 1291 aa10.45□□□□□ -0.74
VPS28-214ENST00000531032 EBPQ15125 230 aaKnown RBP10.45□□□□□ -0.74
VPS28-214ENST00000531032 SLC25A35Q3KQZ1 300 aa10.45□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 23.6 ms