RNA–Protein interactions for RNA: ENST00000526553.5

CD44-223, Transcript of CD44 molecule (Indian blood group), human

TSL 4

Gene CD44, Length 571 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-223	ENST00000526553	SFN	P31947	248 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	FCGR2B	P31994	310 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-223	ENST00000526553	FCGR2C	P31995	323 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	CRYBA2	P53672	197 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	BTG1	P62324	171 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	FKBP1B	P68106	108 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	GALK2	Q01415	458 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	DNAJC21	Q5F1R6	531 aa	Known RBP	3.68	□□□□□ -1.82
CD44-223	ENST00000526553	C12orf60	Q5U649	245 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	DLEU7	Q6UYE1	221 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	FAM43B	Q6ZT52	329 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-223	ENST00000526553	TIPARP	Q7Z3E1	657 aa	Known RBP	3.68	□□□□□ -1.82
CD44-223	ENST00000526553	OR4N5	Q8IXE1	308 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	ELMOD2	Q8IZ81	293 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	FBXW8	Q8N3Y1	598 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	U2AF1L4	Q8WU68	220 aa	Known RBP	3.68	□□□□□ -1.82
CD44-223	ENST00000526553	C14orf79	Q96F83	325 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	DTD2	Q96FN9	168 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	C16orf45	Q96MC5	204 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-223	ENST00000526553	ATG10	Q9H0Y0	220 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	TRPV6	Q9H1D0	765 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	C3orf14	Q9HBI5	128 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	RAB9B	Q9NP90	201 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	KCNMB3	Q9NPA1	279 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	IL1RAP	Q9NPH3	570 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	DBF4	Q9UBU7	674 aa	Predicted RBP	3.68	□□□□□ -1.82
CD44-223	ENST00000526553	TEKT2	Q9UIF3	430 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	ERVK-19	Q9WJR5	959 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	ATP6V0A2	Q9Y487	856 aa		3.68	□□□□□ -1.82
CD44-223	ENST00000526553	RIMBP3C	A6NJZ7	1639 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	RIMBP3B	A6NNM3	1639 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	RIMBP3	Q9UFD9	1639 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	SLC15A5	A6NIM6	579 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	TLR4	O00206	839 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	PDHX	O00330	501 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	SLC28A1	O00337	649 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	NDC80	O14777	642 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	MLNR	O43193	412 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	ATP6V1G1	O75348	118 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	CXCL14	O95715	111 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	HP	P00738	406 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	MT-ATP6	P00846	226 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	CXCL10	P02778	98 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	PGK2	P07205	417 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	SERPINF2	P08697	491 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	GSTA2	P09210	222 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	ETS1	P14921	441 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	UGT1A6	P19224	532 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	LMO2	P25791	158 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	STIP1	P31948	543 aa	Known RBP	3.67	□□□□□ -1.82
CD44-223	ENST00000526553	NSF	P46459	744 aa	Known RBP	3.67	□□□□□ -1.82
CD44-223	ENST00000526553	HNRNPF	P52597	415 aa	Known RBP	3.67	□□□□□ -1.82
CD44-223	ENST00000526553	GMFB	P60983	142 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	SST	P61278	116 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	PEX6	Q13608	980 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	LRRC37A5P	Q49AS3	106 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	CYP4V2	Q6ZWL3	525 aa	Predicted RBP	3.67	□□□□□ -1.82
CD44-223	ENST00000526553	TAF8	Q7Z7C8	310 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	NLRP14	Q86W24	1093 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	HPS6	Q86YV9	775 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	ARL6IP6	Q8N6S5	226 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	C4orf32	Q8N8J7	132 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	LEMD2	Q8NC56	503 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	CCNY	Q8ND76	341 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	OR52E1	Q8NGJ3	308 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	HAS2	Q92819	552 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	FAM46B	Q96A09	425 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	RFT1	Q96AA3	541 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	SPAG8	Q99932	426 aa	Predicted RBP	3.67	□□□□□ -1.82
CD44-223	ENST00000526553	CCDC28B	Q9BUN5	200 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	CARD9	Q9H257	536 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	ADNP	Q9H2P0	1102 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	MOB1A	Q9H8S9	216 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	VIPAS39	Q9H9C1	493 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	POLE3	Q9NRF9	147 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	PIGV	Q9NUD9	493 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	DNPEP	Q9ULA0	475 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	NCKAP1	Q9Y2A7	1128 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	STYXL1	Q9Y6J8	313 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	ABCA7	Q8IZY2	2146 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553	MRC2	Q9UBG0	1479 aa		3.67	□□□□□ -1.82
CD44-223	ENST00000526553		K7EQG2	157 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	CPLX1	O14810	134 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	PSMD3	O43242	534 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	GPRIN2	O60269	458 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	NOL3	O60936	208 aa	Known RBP	3.66	□□□□□ -1.82
CD44-223	ENST00000526553	ANGPTL1	O95841	491 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	SFTPB	P07988	381 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	ANPEP	P15144	967 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	CCND2	P30279	289 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	SRD5A2	P31213	254 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	HPD	P32754	393 aa	Predicted RBP	3.66	□□□□□ -1.82
CD44-223	ENST00000526553	RABIF	P47224	123 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	NUMB	P49757	651 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	CNN1	P51911	297 aa	Known RBP	3.66	□□□□□ -1.82
CD44-223	ENST00000526553	SRP54	P61011	504 aa	Known RBP	3.66	□□□□□ -1.82
CD44-223	ENST00000526553	CCZ1B	P86790	482 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	CCZ1	P86791	482 aa	Predicted RBP	3.66	□□□□□ -1.82
CD44-223	ENST00000526553	GABPA	Q06546	454 aa		3.66	□□□□□ -1.82
CD44-223	ENST00000526553	SIX1	Q15475	284 aa	Predicted RBP	3.66	□□□□□ -1.82

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