RNA–Protein interactions for RNA: ENST00000514093.5

SQSTM1-215, Transcript of sequestosome 1, humanhuman

TSL 5

Gene SQSTM1, Length 842 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-215ENST00000514093 TBL3Q12788 808 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 DCST1Q5T197 706 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 VASNQ6EMK4 673 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 UBE3DQ7Z6J8 389 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 YTHDF3Q7Z739 585 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 CNTN4Q8IWV2 1026 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 PM20D2Q8IYS1 436 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 SLC15A4Q8N697 577 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 MBD3L2Q8NHZ7 208 aaPredicted RBP18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 DIO2Q92813 273 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 ZNF597Q96LX8 424 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 DGAT2Q96PD7 388 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 BDH2Q9BUT1 245 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 UGT2B28Q9BY64 529 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 NT5DC2Q9H857 520 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 LYRM4Q9HD34 91 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 PPANQ9NQ55 473 aaKnown RBP18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 GALNT8Q9NY28 637 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 ZANQ9Y493 2812 aa18.6■□□□□ 0.57
SQSTM1-215ENST00000514093 NCF1BA6NI72 391 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 CD8B2A6NJW9 211 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 NCF1CA8MVU1 366 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 CASKO14936 926 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 PRAMEF4O60810 478 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 NCF1P14598 390 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 BMP7P18075 431 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 GSTM2P28161 218 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 SERPINB3P29508 390 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 STT3AP46977 705 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 SLC6A12P48065 614 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 ZNF460Q14592 562 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 TOMM20Q15388 145 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 EIPR1Q53HC9 387 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 FBXO48Q5FWF7 155 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 TEDDM1Q5T9Z0 273 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 PRAMEF9Q5VWM5 478 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 FAM45BPQ6NSW5 357 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 SYDE1Q6ZW31 735 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 LRRC75A-AS1Q8N1F1 130 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 FAM45AQ8TCE6 357 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 SMPDL3BQ92485 455 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 MAGOHBQ96A72 148 aaKnown RBP18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 WDYHV1Q96HA8 205 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 GNRHR2Q96P88 292 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 C6orf203Q9P0P8 240 aaPredicted RBP18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 TRPS1Q9UHF7 1281 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 OARD1Q9Y530 152 aa18.59■□□□□ 0.57
SQSTM1-215ENST00000514093 ARID1AO14497 2285 aa18.58■□□□□ 0.57
SQSTM1-215ENST00000514093 CES2O00748 559 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 ERN1O75460 977 aaKnown RBP18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 IL18BPO95998 194 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 TMIGD3P0DMS9 266 aaPredicted RBP18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 ZNF37AP17032 561 aaPredicted RBP18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 CPN2P22792 545 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 ATP5A1P25705 553 aaKnown RBP18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 HPDP32754 393 aaPredicted RBP18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 SOX18P35713 384 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 CPA2P48052 419 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 KCNC1P48547 511 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 HNMTP50135 292 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 CDK9P50750 372 aaKnown RBP18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 SF3B4Q15427 424 aaKnown RBP eCLIP18.58■□□□□ 0.564e-17■■■■■ 33.5
SQSTM1-215ENST00000514093 SPANXN3Q5MJ09 141 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 PLXDC2Q6UX71 529 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 CAPN12Q6ZSI9 719 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 FRA10AC1Q70Z53 315 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 IGDCC3Q8IVU1 814 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 ACOT4Q8N9L9 421 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 ISL2Q96A47 359 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 RHBDF1Q96CC6 855 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 PERPQ96FX8 193 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 CERS2Q96G23 380 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 RBM18Q96H35 190 aaKnown RBP18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 KCNC2Q96PR1 638 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 PRM3Q9NNZ6 103 aa18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 EIF3LQ9Y262 564 aaKnown RBP18.58■□□□□ 0.56
SQSTM1-215ENST00000514093 ATRQ13535 2644 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 CLGNO14967 610 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 HPNP05981 417 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 SLCO1A2P46721 670 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 FBXW4P57775 412 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 HERVK_113P63132 956 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 ERVK-8P63133 956 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 CDKL1Q00532 357 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 TGM3Q08188 693 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 TSNQ15631 228 aaKnown RBP18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 NTRK2Q16620 822 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 MSS51Q4VC12 460 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 WIPI1Q5MNZ9 446 aaPredicted RBP18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 DND1Q8IYX4 353 aaKnown RBP18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 SLC44A1Q8WWI5 657 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 PIGTQ969N2 578 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 ESAMQ96AP7 390 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 DOCK7Q96N67 2140 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 PIP5K1AQ99755 562 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 ERVK-6Q9BXR3 956 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 WWTR1Q9GZV5 400 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 UBQLN3Q9H347 655 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 CALHM2Q9HA72 323 aa18.57■□□□□ 0.56
SQSTM1-215ENST00000514093 ERVK-19Q9WJR5 959 aa18.57■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms