RNA–Protein interactions for RNA: ENST00000489979.1

VARS-227, Transcript of valyl-tRNA synthetase, humanhuman

TSL 3

Gene VARS, Length 658 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VARS-227ENST00000489979 ARHGEF9O43307 516 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 FGF17O60258 216 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 TRAPPC6AO75865 159 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 C1QAP02745 245 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 FBXO45P0C2W1 286 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 NCF1P14598 390 aaPredicted RBP12.8□□□□□ -0.36
VARS-227ENST00000489979 ATP5A1P25705 553 aaKnown RBP12.8□□□□□ -0.36
VARS-227ENST00000489979 CTSSP25774 331 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 PCSK6P29122 969 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 MSH2P43246 934 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 STT3AP46977 705 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 CYP1B1Q16678 543 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 NSUN5P2Q63ZY6 315 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 TRMT10BQ6PF06 316 aaKnown RBP12.8□□□□□ -0.36
VARS-227ENST00000489979 ADAMTSL2Q86TH1 951 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 PM20D2Q8IYS1 436 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 DND1Q8IYX4 353 aaKnown RBP12.8□□□□□ -0.36
VARS-227ENST00000489979 ACOT4Q8N9L9 421 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 COX4I2Q96KJ9 171 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 ZNF597Q96LX8 424 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 GAL3ST4Q96RP7 486 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 TRIB1Q96RU8 372 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 NAT9Q9BTE0 207 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 ROGDIQ9GZN7 287 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 PRDM14Q9GZV8 571 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 JKAMPQ9P055 326 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 CTNNAL1Q9UBT7 734 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 SLC6A5Q9Y345 797 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 SPACA6W5XKT8 324 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 MED12Q93074 2177 aa12.8□□□□□ -0.36
VARS-227ENST00000489979 H7C1Q1 480 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 CLGNO14967 610 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 DYRK3O43781 588 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 TRIM3O75382 744 aaPredicted RBP12.79□□□□□ -0.36
VARS-227ENST00000489979 ACSL3O95573 720 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 CPN2P22792 545 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 SERPINB3P29508 390 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 OPRM1P35372 400 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 IGLV3-21P80748 117 aaPredicted RBP12.79□□□□□ -0.36
VARS-227ENST00000489979 DOC2AQ14183 400 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 SF3B4Q15427 424 aaKnown RBP eCLIP12.79□□□□□ -0.361e-11■■■■□ 25.5
VARS-227ENST00000489979 NTRK2Q16620 822 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 FBXO48Q5FWF7 155 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 Q5PR19 223 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 HP1BP3Q5SSJ5 553 aaPredicted RBP12.79□□□□□ -0.36
VARS-227ENST00000489979 CIARTQ8N365 385 aaPredicted RBP12.79□□□□□ -0.36
VARS-227ENST00000489979 SRFBP1Q8NEF9 429 aaKnown RBP12.79□□□□□ -0.36
VARS-227ENST00000489979 TRIM58Q8NG06 486 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 ANKRD49Q8WVL7 239 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 PTCD3Q96EY7 689 aaKnown RBP12.79□□□□□ -0.36
VARS-227ENST00000489979 CFAP36Q96G28 342 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 RBM18Q96H35 190 aaKnown RBP12.79□□□□□ -0.36
VARS-227ENST00000489979 TBCDQ9BTW9 1192 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 EHD1Q9H4M9 534 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 DNAJC11Q9NVH1 559 aa12.79□□□□□ -0.36
VARS-227ENST00000489979 ANK3Q12955 4377 aaKnown RBP12.79□□□□□ -0.36
VARS-227ENST00000489979 HIVEP2P31629 2446 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 MBD3L4A6NDZ8 208 aaPredicted RBP12.78□□□□□ -0.36
VARS-227ENST00000489979 MBD3L3A6NE82 208 aaPredicted RBP12.78□□□□□ -0.36
VARS-227ENST00000489979 MBD3L5A6NJ08 208 aaPredicted RBP12.78□□□□□ -0.36
VARS-227ENST00000489979 CD8B2A6NJW9 211 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 TAPBPO15533 448 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 SH3BGRLO75368 114 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 IL18BPO95998 194 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 CD22P20273 847 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 HIST1H1TP22492 207 aaPredicted RBP12.78□□□□□ -0.36
VARS-227ENST00000489979 CDK9P50750 372 aaKnown RBP12.78□□□□□ -0.36
VARS-227ENST00000489979 TAS2R39P59534 338 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 HERVK_113P63132 956 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 ERVK-8P63133 956 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 TGFBIQ15582 683 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 BICRALQ6AI39 1079 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 VASNQ6EMK4 673 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 SYDE1Q6ZW31 735 aaPredicted RBP12.78□□□□□ -0.36
VARS-227ENST00000489979 SLC29A4Q7RTT9 530 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 P3H2Q8IVL5 708 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 SNX31Q8N9S9 440 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 BBOF1Q8ND07 529 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 LRRN4CLQ8ND94 238 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 C7orf57Q8NEG2 295 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 MBD3L2Q8NHZ7 208 aaPredicted RBP12.78□□□□□ -0.36
VARS-227ENST00000489979 DIO2Q92813 273 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 ESAMQ96AP7 390 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 WDYHV1Q96HA8 205 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 FBXL20Q96IG2 436 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 ART5Q96L15 291 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 DACH2Q96NX9 599 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 TMEM79Q9BSE2 394 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 REPIN1Q9BWE0 567 aaKnown RBP12.78□□□□□ -0.36
VARS-227ENST00000489979 RBM24Q9BX46 236 aaKnown RBP12.78□□□□□ -0.36
VARS-227ENST00000489979 ERVK-6Q9BXR3 956 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 MS4A8Q9BY19 250 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 UGT2B28Q9BY64 529 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 WWTR1Q9GZV5 400 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 PRM3Q9NNZ6 103 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 SDAD1Q9NVU7 687 aaKnown RBP eCLIP12.78□□□□□ -0.36
VARS-227ENST00000489979 WWOXQ9NZC7 414 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 ERVK-19Q9WJR5 959 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 PSAT1Q9Y617 370 aa12.78□□□□□ -0.36
VARS-227ENST00000489979 IQANK1A0A1B0GTG1 560 aa12.77□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 50.2 ms