RNA–Protein interactions for RNA: ENST00000487938.5

VIM-206, Transcript of vimentin, humanhuman

TSL 5

Gene VIM, Length 2,272 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-206ENST00000487938 HNRNPA1L2Q32P51 320 aaKnown RBP17.03■□□□□ 0.32
VIM-206ENST00000487938 ZNF765Q7L2R6 523 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SLC34A3Q8N130 599 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 TMIEQ8NEW7 156 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 OPALINQ96PE5 141 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 AIF1LQ9BQI0 150 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 C11orf49Q9H6J7 331 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 LHX9Q9NQ69 397 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 MRPS23Q9Y3D9 190 aaKnown RBP17.03■□□□□ 0.32
VIM-206ENST00000487938 TSC22D4Q9Y3Q8 395 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 PCDHGB6Q9Y5F9 930 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 PPM1DO15297 605 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SLC28A2O43868 658 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 VEGFDO43915 354 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 TMPRSS11DO60235 418 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 STATHP02808 62 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 H1F0P07305 194 aaKnown RBP17.03■□□□□ 0.32
VIM-206ENST00000487938 OR12D1P0DN82 309 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 VASPP50552 380 aaPredicted RBP17.03■□□□□ 0.32
VIM-206ENST00000487938 ILKQ13418 452 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 PIN1Q13526 163 aaPredicted RBP17.03■□□□□ 0.32
VIM-206ENST00000487938 DESI1Q6ICB0 168 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 C19orf48Q6RUI8 117 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SPRED2Q7Z698 418 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 DCUN1D3Q8IWE4 304 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 PSD4Q8NDX1 1056 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 OR5D16Q8NGK9 328 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 WFIKKN2Q8TEU8 576 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SMPDL3AQ92484 453 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 RHBGQ9H310 441 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SERHL2Q9H4I8 314 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 MVB12BQ9H7P6 319 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 SEMA3GQ9NS98 782 aa17.03■□□□□ 0.32
VIM-206ENST00000487938 PRAMEF27A3QJZ7 478 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 HAT1O14929 419 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 KIAA0355O15063 1070 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 SNPHO15079 494 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 OR1F1O43749 312 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 ADAP00813 363 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 TNNI3P19429 210 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 CTNNB1P35222 781 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 CCT3P49368 545 aaKnown RBP17.02■□□□□ 0.32
VIM-206ENST00000487938 XKP51811 444 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 PCBP4P57723 403 aaKnown RBP17.02■□□□□ 0.32
VIM-206ENST00000487938 TARDBPQ13148 414 aaKnown RBP eCLIP17.02■□□□□ 0.32
VIM-206ENST00000487938 COMTD1Q86VU5 262 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 CACUL1Q86Y37 369 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 IQCF1Q8N6M8 205 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 TCEANCQ8N8B7 351 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 XAGE5Q8WWM1 108 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 POLR2J3Q9H1A7 115 aaKnown RBP17.02■□□□□ 0.32
VIM-206ENST00000487938 HHATLQ9HCP6 504 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 DYRK4Q9NR20 520 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 ERVK13-1Q9NX77 482 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 EHD3Q9NZN3 535 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 SEC14L3Q9UDX4 400 aa17.02■□□□□ 0.32
VIM-206ENST00000487938 EDDM13A0A1B0GTR0 161 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 WWP2O00308 870 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 LCMT2O60294 686 aaKnown RBP17.01■□□□□ 0.31
VIM-206ENST00000487938 PCCBP05166 539 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 KCNJ5P48544 419 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 HTRA4P83105 476 aaPredicted RBP17.01■□□□□ 0.31
VIM-206ENST00000487938 ZNF354BQ96LW1 612 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 TAPBPLQ9BX59 468 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 KCNK12Q9HB15 430 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 C14orf119Q9NWQ9 140 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 MGAT4BQ9UQ53 548 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 CDH23Q9H251 3354 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 A8MU76 341 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 ADH1CP00326 375 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 CCR8P51685 355 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 LSM11P83369 360 aaKnown RBP eCLIP17.01■□□□□ 0.31
VIM-206ENST00000487938 SPANXN2Q5MJ10 180 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 PGBD2Q6P3X8 592 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 PAQR6Q6TCH4 344 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 CASP12Q6UXS9 341 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 SPATC1Q76KD6 591 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 GDPD3Q7L5L3 318 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 SLC7A13Q8TCU3 470 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 CXorf40AQ8TE69 158 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 KLHL6Q8WZ60 621 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 TRPC4Q9UBN4 977 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 SLC27A6Q9Y2P4 619 aa17.01■□□□□ 0.31
VIM-206ENST00000487938 GPC6Q9Y625 555 aaPredicted RBP17.01■□□□□ 0.31
VIM-206ENST00000487938 HEPACAM2A8MVW5 462 aa17■□□□□ 0.31
VIM-206ENST00000487938 M0R3H8 397 aa17■□□□□ 0.31
VIM-206ENST00000487938 KMOO15229 486 aa17■□□□□ 0.31
VIM-206ENST00000487938 CSO75390 466 aaKnown RBP17■□□□□ 0.31
VIM-206ENST00000487938 SEMA3DO95025 777 aa17■□□□□ 0.31
VIM-206ENST00000487938 RB1P06400 928 aa17■□□□□ 0.31
VIM-206ENST00000487938 CSTF2P33240 577 aaKnown RBP eCLIP17■□□□□ 0.31
VIM-206ENST00000487938 RPS19P39019 145 aaKnown RBP17■□□□□ 0.31
VIM-206ENST00000487938 SNRPGP62308 76 aaKnown RBP17■□□□□ 0.31
VIM-206ENST00000487938 ZNF234Q14588 700 aa17■□□□□ 0.31
VIM-206ENST00000487938 KCNJ8Q15842 424 aa17■□□□□ 0.31
VIM-206ENST00000487938 TIMM50Q3ZCQ8 353 aa17■□□□□ 0.31
VIM-206ENST00000487938 SLX4IPQ5VYV7 408 aa17■□□□□ 0.31
VIM-206ENST00000487938 ERN2Q76MJ5 926 aaKnown RBP17■□□□□ 0.31
VIM-206ENST00000487938 ADCK2Q7Z695 626 aa17■□□□□ 0.31
VIM-206ENST00000487938 UBE3DQ7Z6J8 389 aa17■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms