RNA–Protein interactions for RNA: ENST00000487150.2

LIMS3-205, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 3 BASIC

Gene LIMS3, Length 782 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-205ENST00000487150 HSDL2Q6YN16 418 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 LRRC34Q8IZ02 419 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 FAM9CQ8IZT9 166 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 SHISA5Q8N114 240 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 ZNF843Q8N446 348 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 SIRT6Q8N6T7 355 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 HORMAD2Q8N7B1 307 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 NFAM1Q8NET5 270 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-205ENST00000487150 OR5L2Q8NGL0 311 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 SUN3Q8TAQ9 357 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 PNPLA2Q96AD5 504 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 TM4SF18Q96CE8 201 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 KLHL29Q96CT2 875 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 ZNF764Q96H86 408 aaPredicted RBP13.67□□□□□ -0.22
LIMS3-205ENST00000487150 FBXL20Q96IG2 436 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 DEFB126Q9BYW3 111 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 SEMA4CQ9C0C4 833 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 B3GNT3Q9Y2A9 372 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 DLGAP4Q9Y2H0 992 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 CCL27Q9Y4X3 112 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 NUP210LQ5VU65 1888 aa13.67□□□□□ -0.22
LIMS3-205ENST00000487150 GLOD5A6NK44 160 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 OR6C76A6NM76 312 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 A8MUA0 341 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 A8MUI8 341 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 TGFBR3LH3BV60 316 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 LSM1O15116 133 aaKnown RBP13.66□□□□□ -0.22
LIMS3-205ENST00000487150 ZFAND5O76080 213 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 SLITRK5O94991 958 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 IL3P08700 152 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 LINC00032P0C843 101 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 CPMP14384 443 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 PORP16435 677 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-205ENST00000487150 DDCP20711 480 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 WDR4P57081 412 aaKnown RBP13.66□□□□□ -0.22
LIMS3-205ENST00000487150 RPL38P63173 70 aaKnown RBP13.66□□□□□ -0.22
LIMS3-205ENST00000487150 ID2Q02363 134 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 BST1Q10588 318 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 SMU1Q2TAY7 513 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 UGT3A2Q3SY77 523 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 ACER2Q5QJU3 275 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 B3GNTL1Q67FW5 361 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-205ENST00000487150 NOXRED1Q6NXP6 359 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 ATG14Q6ZNE5 492 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 GALNT12Q8IXK2 581 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 ARMC10Q8N2F6 343 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 LRRC25Q8N386 305 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-205ENST00000487150 APCDD1LQ8NCL9 501 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 OR1N1Q8NGS0 311 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 SLC2A12Q8TD20 617 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 C16orf78Q8WTQ4 265 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 PTPMT1Q8WUK0 201 aaPredicted RBP13.66□□□□□ -0.22
LIMS3-205ENST00000487150 DYDC1Q8WWB3 177 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 PSMF1Q92530 271 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 RIT1Q92963 219 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 NCLNQ969V3 563 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 ARL8AQ96BM9 186 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 ERP27Q96DN0 273 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 EBPLQ9BY08 206 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 OR8D2Q9GZM6 311 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 ZDHHC2Q9UIJ5 367 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 UTS2RQ9UKP6 389 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 MAPRE3Q9UPY8 281 aa13.66□□□□□ -0.22
LIMS3-205ENST00000487150 ATMQ13315 3056 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 TRAV17A0A0B4J275 112 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 TMEM233B4DJY2 109 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 MASP2O00187 686 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 SKAP2O75563 359 aaPredicted RBP13.65□□□□□ -0.22
LIMS3-205ENST00000487150 PRKRAO75569 313 aaKnown RBP13.65□□□□□ -0.22
LIMS3-205ENST00000487150 PDGFAP04085 211 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 ATP1B1P05026 303 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 NTSP30990 170 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 XKP51811 444 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 RAE1P78406 368 aaKnown RBP13.65□□□□□ -0.22
LIMS3-205ENST00000487150 INAQ16352 499 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 TTMPQ5BVD1 217 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 LINC00696Q6ZRV3 163 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 RPS19BP1Q86WX3 136 aaKnown RBP13.65□□□□□ -0.22
LIMS3-205ENST00000487150 OR4N5Q8IXE1 308 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 GPALPP1Q8IXQ4 340 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 CDC26Q8NHZ8 85 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 HAS2Q92819 552 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 ZBTB9Q96C00 473 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 TUBGCP3Q96CW5 907 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 FCRL1Q96LA6 429 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 TUBB1Q9H4B7 451 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 MANSC1Q9H8J5 431 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 SLAMF7Q9NQ25 335 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 STMN3Q9NZ72 180 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 CFL2Q9Y281 166 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 POLR3HQ9Y535 204 aaPredicted RBP13.65□□□□□ -0.22
LIMS3-205ENST00000487150 CHD6Q8TD26 2715 aa13.65□□□□□ -0.22
LIMS3-205ENST00000487150 OR5H15A6NDH6 313 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 TRPC5OSA6NMA1 111 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 PGRMC2O15173 223 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 ITM2AO43736 263 aa13.64□□□□□ -0.23
LIMS3-205ENST00000487150 SNNO75324 88 aaPredicted RBP13.64□□□□□ -0.23
LIMS3-205ENST00000487150 LYPLA1O75608 230 aaPredicted RBP13.64□□□□□ -0.23
LIMS3-205ENST00000487150 ERAL1O75616 437 aaKnown RBP13.64□□□□□ -0.23
LIMS3-205ENST00000487150 CELA2AP08217 269 aa13.64□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms