RNA–Protein interactions for RNA: ENST00000477935.1

VPS50-214, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 760 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-214ENST00000477935 CMTM3Q96MX0 182 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 CHCHD6Q9BRQ6 235 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 MED10Q9BTT4 135 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 TFB2MQ9H5Q4 396 aaKnown RBP4.22□□□□□ -1.73
VPS50-214ENST00000477935 UPF2Q9HAU5 1272 aaKnown RBP4.22□□□□□ -1.73
VPS50-214ENST00000477935 CSNK1G1Q9HCP0 422 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 MRPL40Q9NQ50 206 aaKnown RBP4.22□□□□□ -1.73
VPS50-214ENST00000477935 KRT84Q9NSB2 600 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 ODF2LQ9ULJ1 636 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 GAB2Q9UQC2 676 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 ERVW-1Q9UQF0 538 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 B3GALT5Q9Y2C3 310 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 CA5BQ9Y2D0 317 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 MAP1AP78559 2803 aaPredicted RBP4.22□□□□□ -1.73
VPS50-214ENST00000477935 RTTNQ86VV8 2226 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 PLXNA2O75051 1894 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 DCHS2Q6V1P9 2916 aa4.22□□□□□ -1.73
VPS50-214ENST00000477935 SHANK1Q9Y566 2161 aa4.21□□□□□ -1.73
VPS50-214ENST00000477935 ITIH6Q6UXX5 1313 aa4.21□□□□□ -1.73
VPS50-214ENST00000477935 LOC101059948A0A1B0GTJ6 334 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 A8MZ25 164 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 F5H0A9 414 aaPredicted RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 CLDN5O00501 218 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 FPGTO14772 594 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 ALOX15BO15296 676 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 OGG1O15527 345 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 BUD23O43709 281 aaKnown RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 PRKNO60260 465 aaPredicted RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 GPC4O75487 556 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 PDE9AO76083 593 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 OR2C1O95371 312 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 PAK4O96013 591 aaPredicted RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 TNNC2P02585 160 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 CCL4P13236 92 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 PRLRP16471 622 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 HRH2P25021 359 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 PSMA5P28066 241 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 CD70P32970 193 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 CSTF2P33240 577 aaKnown RBP eCLIP4.21□□□□□ -1.74
VPS50-214ENST00000477935 CSKP41240 450 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 MSH2P43246 934 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 PGFP49763 221 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 GPR143P51810 404 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 CRIP2P52943 208 aaPredicted RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 CTSCP53634 463 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 RPS21P63220 83 aaKnown RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 PRAMEP78395 509 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 SULT2A1Q06520 285 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 CNTN1Q12860 1018 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 MAMLD1Q13495 774 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 C16orf72Q14CZ0 275 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 ZNF630Q2M218 657 aaPredicted RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 MRGPRG-AS1Q2M3A8 158 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 ASTE1Q2TB18 679 aaPredicted RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 TMEM198Q66K66 360 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 SLC39A4Q6P5W5 647 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 TMEM154Q6P9G4 183 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 KLHL35Q6PF15 583 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 PLXDC2Q6UX71 529 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 GCNT7Q6ZNI0 430 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 CFAP77Q6ZQR2 320 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 CLEC17AQ6ZS10 378 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 PTAR1Q7Z6K3 402 aaPredicted RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 GKN2Q86XP6 184 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 TGIF2LYQ8IUE0 185 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 ZC3H3Q8IXZ2 948 aaKnown RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 IQCKQ8N0W5 287 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 STK40Q8N2I9 435 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 GBGT1Q8N5D6 347 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 ST6GALNAC3Q8NDV1 305 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 OR8D1Q8WZ84 308 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 ZNF501Q96CX3 271 aaPredicted RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 C14orf79Q96F83 325 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 ZNF354BQ96LW1 612 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 OR2A14Q96R47 310 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 NUDCD1Q96RS6 583 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 BARD1Q99728 777 aaKnown RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 NCAPGQ9BPX3 1015 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 MRPL45Q9BRJ2 306 aaKnown RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 SLC25A23Q9BV35 468 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 SLC17A9Q9BYT1 436 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 ST6GALNAC4Q9H4F1 302 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 PARVGQ9HBI0 331 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 AGPAT4Q9NRZ5 378 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 BLOC1S4Q9NUP1 217 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 OSER1Q9NX31 292 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 SLC39A1Q9NY26 324 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 APOBEC3BQ9UH17 382 aaKnown RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 SESN1Q9Y6P5 492 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 MYH10P35580 1976 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 UNC13CQ8NB66 2214 aa4.21□□□□□ -1.74
VPS50-214ENST00000477935 MN1Q10571 1320 aaPredicted RBP4.21□□□□□ -1.74
VPS50-214ENST00000477935 FBN1P35555 2871 aaKnown RBP4.2□□□□□ -1.74
VPS50-214ENST00000477935 ABCA4P78363 2273 aa4.2□□□□□ -1.74
VPS50-214ENST00000477935 DOCK9Q9BZ29 2069 aa4.2□□□□□ -1.74
VPS50-214ENST00000477935 A0A0G2JNG1 304 aa4.2□□□□□ -1.74
VPS50-214ENST00000477935 FRMD3A2A2Y4 597 aa4.2□□□□□ -1.74
VPS50-214ENST00000477935 MYO1GB0I1T2 1018 aa4.2□□□□□ -1.74
VPS50-214ENST00000477935 ANKRD63C9JTQ0 380 aa4.2□□□□□ -1.74
VPS50-214ENST00000477935 K7ENM7 598 aa4.2□□□□□ -1.74
Retrieved 100 of 20,778 RNA–protein pairs in 29 ms