RNA–Protein interactions for RNA: ENST00000472524.1

CCDC88B-205, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 779 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-205ENST00000472524 TMPRSS11DO60235 418 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 GBAP04062 536 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 FAM58BPP0C7Q3 252 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 NR2F6P10588 404 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 ALOX15P16050 662 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 CNTFP26441 200 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 PLGLB1Q02325 96 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 CUL3Q13618 768 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 CMPK2Q5EBM0 449 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 TTC19Q6DKK2 380 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 METTL2BQ6P1Q9 378 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 DGAT2L6Q6ZPD8 337 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 RPS27LQ71UM5 84 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 FGD2Q7Z6J4 655 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 NUDT13Q86X67 352 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 ZNF295-AS1Q8N0V1 137 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 ZFP62Q8NB50 900 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 OR8K3Q8NH51 312 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 C16orf52Q8NHV5 167 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 TANKQ92844 425 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 RBM18Q96H35 190 aaKnown RBP14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 SENP5Q96HI0 755 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 ZBTB26Q9HCK0 441 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 SEMA4BQ9NPR2 832 aaPredicted RBP14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 ZNF180Q9UJW8 692 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 NFU1Q9UMS0 254 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 ASB4Q9Y574 426 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 ADGRG4Q8IZF6 3080 aa14.56□□□□□ -0.08
CCDC88B-205ENST00000472524 DCHS2Q6V1P9 2916 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 EXOC1LA0A1B0GW35 172 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 A0A1W2PR48 441 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 WASHC1A8K0Z3 465 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 FAM166BA8MTA8 275 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 KIF2AO00139 706 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 FOXE1O00358 373 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 PROM1O43490 865 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 OR10H2O60403 315 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 ZNF354AO60765 605 aaPredicted RBP14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 PDE9AO76083 593 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 AIFM1O95831 613 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 TPOP07202 933 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 COL6A2P12110 1019 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 PTGS2P35354 604 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 SMSP52788 366 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 ARFIP1P53367 373 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 HERVK_113P63132 956 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 ERVK-8P63133 956 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 ASPHQ12797 758 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 TRAF3Q13114 568 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 MRM1Q6IN84 353 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 RTL4Q6ZR62 310 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 CD163Q86VB7 1156 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 DOLPP1Q86YN1 238 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 C9orf40Q8IXQ3 194 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 C7orf57Q8NEG2 295 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 OR2M7Q8NG81 312 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 OR52N2Q8NGI0 321 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 UCN3Q969E3 161 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 ART5Q96L15 291 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 SERPINI1Q99574 410 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 MRPL57Q9BQC6 102 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 CNPPD1Q9BV87 410 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 ERVK-6Q9BXR3 956 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 DEFB127Q9H1M4 99 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 MRPL46Q9H2W6 279 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 DDX31Q9H8H2 851 aaKnown RBP14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 WDR41Q9HAD4 459 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 ERVK-19Q9WJR5 959 aa14.55□□□□□ -0.08
CCDC88B-205ENST00000472524 INTS1Q8N201 2190 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 SNRPAP09012 282 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 TSPAN8P19075 237 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 PPIAP62937 165 aaKnown RBP14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 IFT88Q13099 833 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 BIKQ13323 160 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 SGO1Q5FBB7 561 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 TEX35Q5T0J7 233 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 FRG2Q64ET8 278 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 OPN5Q6U736 354 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 ST13P4Q8IZP2 240 aaPredicted RBP14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 CEP112Q8N8E3 955 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 OR4F6Q8NGB9 312 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 KIF18AQ8NI77 898 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 FBXL20Q96IG2 436 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 FRG2BQ96QU4 278 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 GAL3ST4Q96RP7 486 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 NTMT1Q9BV86 223 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 TEX10Q9NXF1 929 aaPredicted RBP14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 PSD3Q9NYI0 1048 aa14.54□□□□□ -0.08
CCDC88B-205ENST00000472524 TACC2O95359 2948 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 ARHGAP21Q5T5U3 1957 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 IQANK1A0A1B0GTG1 560 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 A8MT66 165 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 ACOT7O00154 380 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 SEMA3DO95025 777 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 GPR75O95800 540 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 IGKV3-11P04433 115 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 RPS17P08708 135 aaKnown RBP14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 AGAP20933 346 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 KIR3DL1P43629 444 aa14.53□□□□□ -0.08
CCDC88B-205ENST00000472524 NR0B1P51843 470 aaKnown RBP14.53□□□□□ -0.08
Retrieved 100 of 20,778 RNA–protein pairs in 27 ms