RNA–Protein interactions for RNA: ENST00000472056.5

COL6A3-209, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 8,628 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-209ENST00000472056 CDCA5Q96FF9 252 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 AMBNQ9NP70 447 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 N4BP2Q86UW6 1770 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-209ENST00000472056 RHBDL3P58872 404 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 CHAF1BQ13112 559 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 CDNFQ49AH0 187 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 MINDY4Q4G0A6 757 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TPGS2Q68CL5 300 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TLDC1Q6P9B6 456 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 OR2AP1Q8NGE2 309 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 OR2T35Q8NGX2 323 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 ZNF587Q96SQ5 575 aaPredicted RBP12.79□□□□□ -0.36
COL6A3-209ENST00000472056 SLC38A3Q99624 504 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 MYOCQ99972 504 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 SLC38A1Q9H2H9 487 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 BRF2Q9HAW0 419 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TMLHEQ9NVH6 421 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 CYP8B1Q9UNU6 501 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 CPQQ9Y646 472 aa12.79□□□□□ -0.36
COL6A3-209ENST00000472056 TISP43B9A030 160 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 CLDN5O00501 218 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 VILLO15195 856 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 LYRM1O43325 122 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 RNF13O43567 381 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 AHSA1O95433 338 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 MT-CYBP00156 380 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 CHRNB1P11230 501 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 TMEM35AQ53FP2 167 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 HES5Q5TA89 166 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 PAQR3Q6TCH7 311 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 THOC6Q86W42 341 aaKnown RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 FOXRED2Q8IWF2 684 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 PYROXD2Q8N2H3 581 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ZNF419Q96HQ0 510 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ANKRD66B4E2M5 251 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 SLC2A5P22732 501 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 THBS2P35442 1172 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ASRGL1Q7L266 308 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 REM2Q8IYK8 340 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 FIBCD1Q8N539 461 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 CDKN2AIPNLQ96HQ2 116 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ATG10Q9H0Y0 220 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 PQBP1O60828 265 aaKnown RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 BCAS1O75363 584 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ATP1B2P14415 290 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 NKX3-2P78367 333 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 CRYZQ08257 329 aaKnown RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ITPK1Q13572 414 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 RNASE10Q5GAN6 216 aaKnown RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 MTFR2Q6P444 385 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 GPR149Q86SP6 731 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ZFAND4Q86XD8 727 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 STK35Q8TDR2 534 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 OR51I1Q9H343 314 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 SRA1Q9HD15 236 aaKnown RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 E7ESA3 106 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 MANBAO00462 879 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 CSF2P04141 144 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ACTR1AP61163 376 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ACTBL2Q562R1 376 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 AGAP6Q5VW22 663 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 PAPD4Q6PIY7 484 aaKnown RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 SLC22A25Q6T423 547 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 KIAA1324Q6UXG2 1013 aaKnown RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 RASGRP3Q8IV61 690 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 EID2Q8N6I1 236 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 NUS1Q96E22 293 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 AGAP4Q96P64 663 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 RANBP9Q96S59 729 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 PNO1Q9NRX1 252 aaKnown RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 SDHAF2Q9NX18 166 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 DNAJC27Q9NZQ0 273 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 TMEM150BA6NC51 233 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 C9J4A7 227 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ITGAMP11215 1152 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 IRF9Q00978 393 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ELP4Q96EB1 424 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 EPHA6Q9UF33 1036 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 UGDHO60701 494 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 OR8U9P0C7N5 309 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 MAGEA11P43364 429 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ERVK-21P61565 698 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 MFSD13AQ14CX5 517 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 DCST2Q5T1A1 773 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 VTCN1Q7Z7D3 282 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 OR5P2Q8WZ92 322 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 SLC25A31Q9H0C2 315 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 TMEM181Q9P2C4 612 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 WDR45Q9Y484 360 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 PRKCGP05129 697 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 WNT4P56705 351 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 GALNT2Q10471 571 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 USP50Q70EL3 339 aaPredicted RBP12.78□□□□□ -0.36
COL6A3-209ENST00000472056 NAALAD2Q9Y3Q0 740 aa12.78□□□□□ -0.36
COL6A3-209ENST00000472056 ITGB5P18084 799 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 SUOXP51687 545 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 TPRA1Q86W33 373 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 IFNL1Q8IU54 200 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 OR56B4Q8NH76 319 aa12.77□□□□□ -0.36
COL6A3-209ENST00000472056 SFXN5Q8TD22 340 aa12.77□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms