RNA–Protein interactions for RNA: ENST00000469511.1

PTPN4-209, Transcript of protein tyrosine phosphatase, non-receptor type 4, humanhuman

TSL 3

Gene PTPN4, Length 476 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN4-209ENST00000469511 SLC22A7Q9Y694 548 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 TENM1Q9UKZ4 2725 aa4.83□□□□□ -1.64
PTPN4-209ENST00000469511 MGAM2Q2M2H8 2515 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 TCRBV7S2A1N4TA0A589 114 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CTIFO43310 598 aaKnown RBP4.82□□□□□ -1.64
PTPN4-209ENST00000469511 PSTPIP1O43586 416 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 KIF5CO60282 957 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CEP104O60308 925 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 HCN1O60741 890 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 NDUFS7O75251 213 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ZFAND5O76080 213 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 SMIM10L1P0DMW3 83 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ETS1P14921 441 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ALOX12P18054 663 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 PAMP19021 973 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 RPS3P23396 243 aaKnown RBP eCLIP4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CTSSP25774 331 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CTNNA2P26232 953 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 SLC1A1P43005 524 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 TBPL1P62380 186 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 PRAMEP78395 509 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ABATP80404 500 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 SORDQ00796 357 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 DUSP8Q13202 625 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 IKZF1Q13422 519 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ARHGAP19Q14CB8 494 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 NAA25Q14CX7 972 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 IQCB1Q15051 598 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 RPS6KA1Q15418 735 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 SIX1Q15475 284 aaPredicted RBP4.82□□□□□ -1.64
PTPN4-209ENST00000469511 HECTD2Q5U5R9 776 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 BICRALQ6AI39 1079 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 RTL4Q6ZR62 310 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF550Q7Z398 422 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 MAATS1Q7Z4T9 603 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CLNKQ7Z7G1 428 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 WFDC3Q8IUB2 231 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CDKL3Q8IVW4 592 aaPredicted RBP4.82□□□□□ -1.64
PTPN4-209ENST00000469511 PPIL6Q8IXY8 311 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 RCOR2Q8IZ40 523 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CA13Q8N1Q1 262 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ARIH2OSQ8N7S6 290 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 PRELID2Q8N945 189 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 NEIL3Q8TAT5 605 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 GSDMBQ8TAX9 411 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 LPGAT1Q92604 370 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 PYCR2Q96C36 320 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 VMP1Q96GC9 406 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ZC3HAV1LQ96H79 300 aaKnown RBP4.82□□□□□ -1.64
PTPN4-209ENST00000469511 SMIM10Q96HG1 83 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 FOPNLQ96NB1 174 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CLUHP3Q96NS8 147 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 TRIB1Q96RU8 372 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CDADC1Q9BWV3 514 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 PLA2G12AQ9BZM1 189 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 LRRC40Q9H9A6 602 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 HOMER3Q9NSC5 361 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 AP5S1Q9NUS5 200 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ZNHIT6Q9NWK9 470 aaKnown RBP4.82□□□□□ -1.64
PTPN4-209ENST00000469511 ERVK13-1Q9NX77 482 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 CHMP5Q9NZZ3 219 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 PPIEQ9UNP9 301 aaKnown RBP4.82□□□□□ -1.64
PTPN4-209ENST00000469511 DTX4Q9Y2E6 619 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 TCAF1Q9Y4C2 921 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 TESMINQ9Y4I5 508 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 SEC23IPQ9Y6Y8 1000 aaKnown RBP4.82□□□□□ -1.64
PTPN4-209ENST00000469511 MEGF8Q7Z7M0 2845 aa4.82□□□□□ -1.64
PTPN4-209ENST00000469511 C15orf38-AP3S2A0A0A6YYH1 394 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 MBD3L3A6NE82 208 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 AHRRA9YTQ3 701 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 GFYI3L273 518 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 HRKO00198 91 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 PJA2O43164 708 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 NDUFS4O43181 175 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 OR1F1O43749 312 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CD5LO43866 347 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 NDUFS3O75489 264 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CCNDBP1O95273 360 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 SIX3O95343 332 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ETHE1O95571 254 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 SERPINC1P01008 464 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 IFNA2P01563 188 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CATP04040 527 aaKnown RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 P04436 131 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 NPPBP16860 134 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CHRM3P20309 590 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 IL10P22301 178 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ADRA1DP25100 572 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CCKARP32238 428 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 SKIV2L2P42285 1042 aaKnown RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 PGGT1BP53609 377 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ATP5J2P56134 94 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ID2Q02363 134 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ASPHQ12797 758 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CDH17Q12864 832 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 NAE1Q13564 534 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 ZNF791Q3KP31 576 aaPredicted RBP4.81□□□□□ -1.64
PTPN4-209ENST00000469511 CHRFAM7AQ494W8 412 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 EIPR1Q53HC9 387 aa4.81□□□□□ -1.64
PTPN4-209ENST00000469511 TM4SF20Q53R12 229 aa4.81□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms